test.toml

[global]
author         = "jgrelet IRD March 2019 PIRATA-FR29 cruise"
debug          = false
echo           = true

[cruise]
cycleMesure    = "PIRATA-FR29"
plateforme     = "THALASSA"
callsign       = "FNFP"
institute      = "IRD"
timezone       = "GMT"
beginDate      = "01/03/2019"
endDate        = "04/04/2019"
pi             = "BOURLES"
creator        = "Jacques.Grelet@ird.fr"

[ctd]
cruisePrefix   = "fr29"
station = 'Station\s*:\s*\D*(\d*)'
stationPrefixLength  = 3
titleSummary  = "CTD profiles processed during PIRATA-FR29 cruise"
typeInstrument   = "SBE911+"
instrumentNumber  = "09P1263"

	[ctd.header]
	isHeader = '^[*#]'
	isDevice = '^\*\s+(Sea-Bird)'
	TIME = 'System UpLoad Time\s*=\s*(\w+)\s+(\d+)\s+(\d+)\s+(\d+):(\d+):(\d+)'
	LATITUDE = 'NMEA\s+Latitude\s*[:=]\s*(\d+)\s+(\d+\.\d+)\s+(\w)'
	LONGITUDE = 'NMEA\s+Longitude\s*[:=]\s*(\d+)\s+(\d+.\d+)\s+(\w)'
	date = 'Date\s*:\s*(\d+)/(\d+)/(\d+)'
	hour = '[Heure|Hour]\s*:\s*(\d+)[:hH](\d+):(\d+)'
	bottomDepth = 'Bottom Depth\s*:\s*(\d*\.?\d+?)\s*\S*'
	operator = 'Operator\s*:\s*(.*)'
	type = 'Type\s*:\s*(.*)'

[btl]
typeInstrument           = "SBE32 standard 24 Niskin bottles"
instrumentNumber         = "unknown"
titleSummary   = "Water sample during PIRATA-FR29 cruise with 20 levels"
comment        = "CTD bottles water sampling with temperature, salinity and oxygen from primary and secondary sensors"

[xbt]

cruisePrefix   = "fr29"
stationPrefixLength  = 3
acquisitionSoftware = "WinMK21"
acquisitionVersion = "2.10.1" 
processingSoftware = ""
processingVersion = ""
type           = "SIPPICAN"
sn             = "01150"
title_summary  = "XBT profiles processed during PIRATA-FR29 cruise"
comment        = "Extract from .edf files"

	[xbt.header]
	endHeader = 'Depth\s*\(m\)'
	TIME = 'Time of Launch\s*[:=]\s*(\d+)/(\d+)/(\d+)'
	DATE = 'Date of Launch\s*[:=]\s*(\d+):(\d+):(\d+)'
	LATITUDE = 'Latitude\s*[:=]\s*(\d+)\s+(\d+\.\d+)(\w)'
	LONGITUDE = 'Longitude\s*[:=]\s*(\d+)\s+(\d+.\d+)(\w)'

[thermo]
cruisePrefix   = "fr29"
stationPrefixLength  = 3 
separator = ","
acquisitionSoftware = "COLCOR"
acquisitionVersion = ""
processingSoftware = ""
processingVersion = ""
type           = "SBE21"
sn             = 3199 
calDate        = "14/01/2019" 
externalType   = "SBE3S"
externalSn     = 4074
externalCalDate = "16/01/2018"
depth_intake   = 4
title_summary  = "Thermosalinograph data acquired with Seabird SBE21 instrument and reduce with THECSAS/COLCOR"
comment        = "Extract from .colcor files"

[ladcp]
cruisePrefix   = "fr29"
stationPrefixLength  = 3
skipHeader = 10
acquisitionSoftware = "BBTALK"
acquisitionVersion = 3.04
processingSoftware = "MATLAB-VISBECK"
processingVersion = "10.16.2"
upType           = "WH300"
upSn             = "24085"
downType         = "WH150"
downSn           = "24543"
title_summary  = "IFM-GEOMAR/LDEO Matlab LADCP-Processing system adapted by FM/PR/JG"
comment        = "Extract from .lad files"

[split]
	[split.ctd]
	ETDD = 2
	PRES = 3
	DEPTH = 4
	TEMP = 5
	PSAL = 18
	DENS = 20
	SVEL = 22
	DOX2 = 16
	FLU2 = 14
	FLU3 = 15
	TUR3 = 13
	NAVG = 23

	[split.ctdAll]
	ETDD = 2
	PRES = 3
	DEPTH = 4
	TE01 = 5
	TE02 = 6
	CND1 = 7
	CND2 = 8
	DOV1 = 9
	DOV2 = 10
	DVT1 = 11
	DVT2 = 12
	TUR3 = 13
	FLU2 = 14
	FLU3 = 15
	DO12 = 16
	DO22 = 17
	PSA1 = 18
	PSA2 = 19
	DEN1 = 20
	DEN2 = 21
	SVEL = 22
	NAVG = 23

	[split.btl]
	BOTL = 1
	month = 2
	day = 3
	year = 4
	PSA1 = 5
	PSA2 = 6
	DO11 = 7
	DO12 = 8
	DO21 = 9
	DO22 = 10
	Potemp090C = 11
	Potemp190C = 12
	ETDD = 13
	PRES = 14
	DEPH = 15
	TE01 = 16
	TE02 = 17
	CND1 = 18
	CND2 = 19
	DOV1 = 20
	DOV2 = 21
	DVT1 = 22
	DVT2 = 23
	TUR3 = 24
	FLU2 = 25
	
[split.xbt]
	DEPTH = 0
	TEMP = 1
	SVEL = 2	

[split.ladcp]
	DEPTH = 0
	EWCT = 1
	NSCT = 2

[split.tsg]
	DEPTH = 0
	SSJT = 1
	SSTP = 2
	SSPS = 3