Create unique RQC conda env with all updated tools

configuration/config.yaml

@@ -6,7 +6,7 @@
 # Affiliation ____________ IRD_U233_TransVIHMI
 # Aim ____________________ Configuration yaml file for quality_control.smk snakefile
 # Date ___________________ 2021.10.12
-# Latest modifications ___ 2023.03.24
+# Latest modifications ___ 2023.03.27
 # Use ____________________ Edit default settings
 
 ###############################################################################
@@ -45,23 +45,23 @@ conda:
   frontend: 'mamba' # Conda frontend (conda or mamba)
   # Available options:                                                                                                                                                               
     #- 'mamba' # mamba (default)                                                                                                                                                     
-    #- 'conda' # conda                                                                                                                                                               
+    #- 'conda' # conda
   osx: # Conda OSX environement yaml files:
     snakemake-base: '../environments/osx/snakemake-base_v.2023.02.yaml' # Snakemake-Base ver. 2023.02
-    #rqc-tools:      '../environments/osx/rqc-tools_v.2023.03'           # RQC-Tools      ver. 2023.03
-    bwa:            '../environments/osx/bwa_v.0.7.17.yaml'             # BWA            ver. 0.7.17
-    fastq-screen:   '../environments/osx/fastq-screen_v.0.15.2.yaml'    # Fastq-Screen   ver. 0.15.2
-    fastqc:         '../environments/osx/fastqc_v.0.11.9.yaml'          # FastQC         ver. 0.11.9
-    multiqc:        '../environments/osx/multiqc_v.1.12.yaml'           # MultiQC        ver. 1.12
+    rqc-tools:      '../environments/osx/rqc-tools_v.2023.03'           # RQC-Tools      ver. 2023.03
+    #bwa:            '../environments/osx/bwa_v.0.7.17.yaml'             # BWA            ver. 0.7.17
+    #fastq-screen:   '../environments/osx/fastq-screen_v.0.15.2.yaml'    # Fastq-Screen   ver. 0.15.2
+    #fastqc:         '../environments/osx/fastqc_v.0.12.1.yaml'          # FastQC         ver. 0.12.1
+    #multiqc:        '../environments/osx/multiqc_v.1.14.yaml'           # MultiQC        ver. 1.14
   linux: # Conda Linux environement yaml files:
     snakemake-base: '../environments/linux/snakemake-base_v.2023.02.yaml' # Snakemake-Base ver. 2023.02
-    #rqc-tools:      '../environments/linux/rqc-tools_v.2023.03'           # RQC-Tools      ver. 2023.03
-    bwa:            '../environments/linux/bwa_v.0.7.17.yaml'             # BWA            ver. 0.7.17
-    fastq-screen:   '../environments/linux/fastq-screen_v.0.15.2.yaml'    # Fastq-Screen   ver. 0.15.2
-    fastqc:         '../environments/linux/fastqc_v.0.11.9.yaml'          # FastQC         ver. 0.11.9
-    multiqc:        '../environments/linux/multiqc_v.1.12.yaml'           # MultiQC        ver. 1.12
+    rqc-tools:      '../environments/linux/rqc-tools_v.2023.03'           # RQC-Tools      ver. 2023.03
+    #bwa:            '../environments/linux/bwa_v.0.7.17.yaml'             # BWA            ver. 0.7.17
+    #fastq-screen:   '../environments/linux/fastq-screen_v.0.15.2.yaml'    # Fastq-Screen   ver. 0.15.2
+    #fastqc:         '../environments/linux/fastqc_v.0.12.1.yaml'          # FastQC         ver. 0.12.1
+    #multiqc:        '../environments/linux/multiqc_v.1.14.yaml'           # MultiQC        ver. 1.14
 
-# conda_version:     '22.9.0' # Conda version (upgrade from "4.12.0")
+# conda_version:     '23.1.0' # Conda version (upgrade from "4.12.0")
 # mamba_version:     '1.0.0'  # Mamba version (faster than conda)
 # snakemake_version: '7.18.1' # Snakemake version (upgrade from  "6.12.3")
 # rename_version:    '1.601'  # Rename version (to rename fastq files)

workflow/environments/linux/bwa_v.0.7.17.yaml

-name: bwa-0.7.17
-channels:
-  - bioconda
-  - defaults
-dependencies:
-  - _libgcc_mutex=0.1=main
-  - _openmp_mutex=5.1=1_gnu
-  - bwa=0.7.17=h5bf99c6_8
-  - libgcc-ng=11.2.0=h1234567_1
-  - libgomp=11.2.0=h1234567_1
-  - perl=5.26.2=h14c3975_0
-  - zlib=1.2.12=h7f8727e_2

workflow/environments/linux/fastq-screen_v.0.15.2.yaml

-name: fastq-screen-0.15.2
-channels:
-  - bioconda
-  - conda-forge
-  - defaults
-dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - bowtie=1.3.1=py39hd400a0c_1
-  - bowtie2=2.4.5=py39hd2f7db1_2
-  - bwa=0.7.17=h7132678_9
-  - bzip2=1.0.8=h7f98852_4
-  - ca-certificates=2022.6.15=ha878542_0
-  - expat=2.4.8=h27087fc_0
-  - fastq-screen=0.15.2=pl5321hdfd78af_0
-  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
-  - font-ttf-inconsolata=3.000=h77eed37_0
-  - font-ttf-source-code-pro=2.038=h77eed37_0
-  - font-ttf-ubuntu=0.83=hab24e00_0
-  - fontconfig=2.14.0=h8e229c2_0
-  - fonts-conda-ecosystem=1=0
-  - fonts-conda-forge=1=0
-  - freetype=2.10.4=h0708190_1
-  - giflib=5.2.1=h36c2ea0_2
-  - icu=70.1=h27087fc_0
-  - jpeg=9e=h166bdaf_1
-  - ld_impl_linux-64=2.36.1=hea4e1c9_2
-  - lerc=3.0=h9c3ff4c_0
-  - libdeflate=1.12=h166bdaf_0
-  - libffi=3.4.2=h7f98852_5
-  - libgcc-ng=12.1.0=h8d9b700_16
-  - libgd=2.3.3=h18fbbfe_3
-  - libgomp=12.1.0=h8d9b700_16
-  - libnsl=2.0.0=h7f98852_0
-  - libpng=1.6.37=h21135ba_2
-  - libstdcxx-ng=12.1.0=ha89aaad_16
-  - libtiff=4.4.0=hc85c160_1
-  - libuuid=2.32.1=h7f98852_1000
-  - libwebp=1.2.2=h3452ae3_0
-  - libwebp-base=1.2.2=h7f98852_1
-  - libzlib=1.2.12=h166bdaf_1
-  - lz4-c=1.9.3=h9c3ff4c_1
-  - ncurses=6.3=h27087fc_1
-  - openssl=3.0.3=h166bdaf_0
-  - perl=5.32.1=2_h7f98852_perl5
-  - perl-gd=2.76=pl5321h5b5514e_1
-  - perl-gdgraph=1.54=pl5321hdfd78af_1
-  - perl-gdtextutil=0.86=pl5321hec16e2b_7
-  - pip=22.1.2=pyhd8ed1ab_0
-  - python=3.9.13=h2660328_0_cpython
-  - python_abi=3.9=2_cp39
-  - readline=8.1.2=h0f457ee_0
-  - setuptools=62.6.0=py39hf3d152e_0
-  - sqlite=3.38.5=h4ff8645_0
-  - tbb=2020.2=h4bd325d_4
-  - tk=8.6.12=h27826a3_0
-  - tzdata=2022a=h191b570_0
-  - wheel=0.37.1=pyhd8ed1ab_0
-  - xz=5.2.5=h516909a_1
-  - zlib=1.2.12=h166bdaf_1
-  - zstd=1.5.2=h8a70e8d_1

workflow/environments/linux/fastqc_v.0.11.9.yaml

-name: fastqc-0.11.9
-channels:
-  - bioconda
-  - defaults
-dependencies:
-  - _libgcc_mutex=0.1=main
-  - _openmp_mutex=5.1=1_gnu
-  - dbus=1.13.18=hb2f20db_0
-  - expat=2.4.4=h295c915_0
-  - fastqc=0.11.9=hdfd78af_1
-  - font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
-  - fontconfig=2.13.1=h6c09931_0
-  - freetype=2.11.0=h70c0345_0
-  - glib=2.69.1=h4ff587b_1
-  - icu=58.2=he6710b0_3
-  - libffi=3.3=he6710b0_2
-  - libgcc-ng=11.2.0=h1234567_1
-  - libgomp=11.2.0=h1234567_1
-  - libpng=1.6.37=hbc83047_0
-  - libstdcxx-ng=11.2.0=h1234567_1
-  - libuuid=1.0.3=h7f8727e_2
-  - libxcb=1.15=h7f8727e_0
-  - libxml2=2.9.14=h74e7548_0
-  - openjdk=11.0.13=h87a67e3_0
-  - pcre=8.45=h295c915_0
-  - perl=5.26.2=h14c3975_0
-  - xz=5.2.5=h7f8727e_1
-  - zlib=1.2.12=h7f8727e_2

workflow/environments/linux/multiqc_v.1.12.yaml

-name: multiqc-1.12
-channels:
-  - bioconda
-  - conda-forge
-  - defaults
-dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - brotli=1.0.9=h166bdaf_7
-  - brotli-bin=1.0.9=h166bdaf_7
-  - brotlipy=0.7.0=py310h5764c6d_1004
-  - bzip2=1.0.8=h7f98852_4
-  - ca-certificates=2022.6.15=ha878542_0
-  - certifi=2022.6.15=py310hff52083_0
-  - cffi=1.15.0=py310h0fdd8cc_0
-  - charset-normalizer=2.0.12=pyhd8ed1ab_0
-  - click=8.1.3=py310hff52083_0
-  - coloredlogs=15.0.1=pyhd8ed1ab_3
-  - colormath=3.0.0=py_2
-  - commonmark=0.9.1=py_0
-  - cryptography=37.0.2=py310h597c629_0
-  - cycler=0.11.0=pyhd8ed1ab_0
-  - dataclasses=0.8=pyhc8e2a94_3
-  - fonttools=4.33.3=py310h5764c6d_0
-  - freetype=2.10.4=h0708190_1
-  - future=0.18.2=py310hff52083_5
-  - giflib=5.2.1=h36c2ea0_2
-  - humanfriendly=10.0=py310hff52083_2
-  - idna=3.3=pyhd8ed1ab_0
-  - importlib-metadata=4.11.4=py310hff52083_0
-  - jinja2=3.1.2=pyhd8ed1ab_1
-  - jpeg=9e=h166bdaf_1
-  - kiwisolver=1.4.3=py310hbf28c38_0
-  - lcms2=2.12=hddcbb42_0
-  - ld_impl_linux-64=2.36.1=hea4e1c9_2
-  - lerc=3.0=h9c3ff4c_0
-  - libblas=3.9.0=15_linux64_openblas
-  - libbrotlicommon=1.0.9=h166bdaf_7
-  - libbrotlidec=1.0.9=h166bdaf_7
-  - libbrotlienc=1.0.9=h166bdaf_7
-  - libcblas=3.9.0=15_linux64_openblas
-  - libdeflate=1.12=h166bdaf_0
-  - libffi=3.4.2=h7f98852_5
-  - libgcc-ng=12.1.0=h8d9b700_16
-  - libgfortran-ng=12.1.0=h69a702a_16
-  - libgfortran5=12.1.0=hdcd56e2_16
-  - libgomp=12.1.0=h8d9b700_16
-  - liblapack=3.9.0=15_linux64_openblas
-  - libnsl=2.0.0=h7f98852_0
-  - libopenblas=0.3.20=pthreads_h78a6416_0
-  - libpng=1.6.37=h21135ba_2
-  - libstdcxx-ng=12.1.0=ha89aaad_16
-  - libtiff=4.4.0=hc85c160_1
-  - libuuid=2.32.1=h7f98852_1000
-  - libwebp=1.2.2=h3452ae3_0
-  - libwebp-base=1.2.2=h7f98852_1
-  - libxcb=1.13=h7f98852_1004
-  - libzlib=1.2.12=h166bdaf_1
-  - lz4-c=1.9.3=h9c3ff4c_1
-  - lzstring=1.0.4=py_1001
-  - markdown=3.3.7=pyhd8ed1ab_0
-  - markupsafe=2.1.1=py310h5764c6d_1
-  - matplotlib-base=3.5.2=py310h5701ce4_0
-  - multiqc=1.12=pyhdfd78af_0
-  - munkres=1.1.4=pyh9f0ad1d_0
-  - ncurses=6.3=h27087fc_1
-  - networkx=2.8.4=pyhd8ed1ab_0
-  - numpy=1.22.4=py310h4ef5377_0
-  - openjpeg=2.4.0=hb52868f_1
-  - openssl=1.1.1o=h166bdaf_0
-  - packaging=21.3=pyhd8ed1ab_0
-  - pillow=9.1.1=py310he619898_1
-  - pip=22.1.2=pyhd8ed1ab_0
-  - pthread-stubs=0.4=h36c2ea0_1001
-  - pycparser=2.21=pyhd8ed1ab_0
-  - pygments=2.12.0=pyhd8ed1ab_0
-  - pyopenssl=22.0.0=pyhd8ed1ab_0
-  - pyparsing=3.0.9=pyhd8ed1ab_0
-  - pysocks=1.7.1=py310hff52083_5
-  - python=3.10.5=h582c2e5_0_cpython
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python_abi=3.10=2_cp310
-  - pyyaml=6.0=py310h5764c6d_4
-  - readline=8.1.2=h0f457ee_0
-  - requests=2.28.0=pyhd8ed1ab_0
-  - rich=12.4.4=pyhd8ed1ab_0
-  - setuptools=62.6.0=py310hff52083_0
-  - simplejson=3.17.6=py310h5764c6d_1
-  - six=1.16.0=pyh6c4a22f_0
-  - spectra=0.0.11=py_1
-  - sqlite=3.38.5=h4ff8645_0
-  - tk=8.6.12=h27826a3_0
-  - typing_extensions=4.2.0=pyha770c72_1
-  - tzdata=2022a=h191b570_0
-  - unicodedata2=14.0.0=py310h5764c6d_1
-  - urllib3=1.26.9=pyhd8ed1ab_0
-  - wheel=0.37.1=pyhd8ed1ab_0
-  - xorg-libxau=1.0.9=h7f98852_0
-  - xorg-libxdmcp=1.1.3=h7f98852_0
-  - xz=5.2.5=h516909a_1
-  - yaml=0.2.5=h7f98852_2
-  - zipp=3.8.0=pyhd8ed1ab_0
-  - zlib=1.2.12=h166bdaf_1
-  - zstd=1.5.2=h8a70e8d_1

workflow/environments/osx/bwa_v.0.7.17.yaml

-name: bwa-0.7.17
-channels:
-  - bioconda
-  - defaults
-dependencies:
-  - bwa=0.7.17=h188c3c3_8
-  - perl=5.26.2=h4e221da_0
-  - zlib=1.2.12=h4dc903c_2

workflow/environments/osx/fastq-screen_v.0.15.2.yaml

-name: fastq-screen-0.15.2
-channels:
-  - conda-forge
-  - bioconda
-  - defaults
-dependencies:
-  - bowtie=1.2.3=py37h770b8ee_0
-  - bowtie2=2.4.5=py37h0f016ca_2
-  - bwa=0.7.17=h188c3c3_8
-  - ca-certificates=2022.6.15=h033912b_0
-  - expat=2.4.8=h96cf925_0
-  - fastq-screen=0.15.2=pl5321hdfd78af_0
-  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
-  - font-ttf-inconsolata=3.000=h77eed37_0
-  - font-ttf-source-code-pro=2.038=h77eed37_0
-  - font-ttf-ubuntu=0.83=hab24e00_0
-  - fontconfig=2.14.0=h676cef8_0
-  - fonts-conda-ecosystem=1=0
-  - fonts-conda-forge=1=0
-  - freetype=2.10.4=h4cff582_1
-  - giflib=5.2.1=hbcb3906_2
-  - icu=70.1=h96cf925_0
-  - jpeg=9e=h5eb16cf_1
-  - lerc=3.0=he49afe7_0
-  - libcxx=14.0.5=hce7ea42_1
-  - libdeflate=1.12=hac89ed1_0
-  - libffi=3.4.2=h0d85af4_5
-  - libgd=2.3.3=h1e214de_3
-  - libiconv=1.16=haf1e3a3_0
-  - libpng=1.6.37=h7cec526_2
-  - libtiff=4.4.0=h9847915_1
-  - libwebp=1.2.2=h28dabe5_0
-  - libwebp-base=1.2.2=h0d85af4_1
-  - libzlib=1.2.12=hfe4f2af_1
-  - lz4-c=1.9.3=he49afe7_1
-  - ncurses=6.3=h96cf925_1
-  - openssl=3.0.3=hfe4f2af_0
-  - perl=5.32.1=2_h0d85af4_perl5
-  - perl-gd=2.76=pl5321hb8176d5_1
-  - perl-gdgraph=1.54=pl5321hdfd78af_1
-  - perl-gdtextutil=0.86=pl5321ha5712d3_7
-  - pip=22.1.2=pyhd8ed1ab_0
-  - python=3.7.12=hf3644f1_100_cpython
-  - python_abi=3.7=2_cp37m
-  - readline=8.1.2=h3899abd_0
-  - setuptools=62.6.0=py37hf985489_0
-  - sqlite=3.38.5=hd9f0692_0
-  - tbb=2020.2=h940c156_4
-  - tk=8.6.12=h5dbffcc_0
-  - wheel=0.37.1=pyhd8ed1ab_0
-  - xz=5.2.5=haf1e3a3_1
-  - zlib=1.2.12=hfe4f2af_1
-  - zstd=1.5.2=ha9df2e0_1

workflow/environments/osx/fastqc_v.0.11.9.yaml

-name: fastqc-0.11.9
-channels:
-  - bioconda
-  - defaults
-dependencies:
-  - fastqc=0.11.9=hdfd78af_1
-  - font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
-  - fontconfig=2.13.1=ha9ee91d_0
-  - freetype=2.11.0=hd8bbffd_0
-  - icu=58.2=h0a44026_3
-  - libcxx=12.0.0=h2f01273_0
-  - libiconv=1.16=hca72f7f_2
-  - libpng=1.6.37=ha441bb4_0
-  - libxml2=2.9.14=hbf8cd5e_0
-  - openjdk=11.0.13=h8346a28_0
-  - perl=5.26.2=h4e221da_0
-  - xz=5.2.5=hca72f7f_1
-  - zlib=1.2.12=h4dc903c_2

workflow/environments/osx/multiqc_v.1.12.yaml

-name: multiqc-1.12
-channels:
-  - bioconda
-  - conda-forge
-  - defaults
-dependencies:
-  - brotli=1.0.9=h5eb16cf_7
-  - brotli-bin=1.0.9=h5eb16cf_7
-  - brotlipy=0.7.0=py310h1961e1f_1004
-  - bzip2=1.0.8=h0d85af4_4
-  - ca-certificates=2022.6.15=h033912b_0
-  - certifi=2022.6.15=py310h2ec42d9_0
-  - cffi=1.15.0=py310hcc37b68_0
-  - charset-normalizer=2.0.12=pyhd8ed1ab_0
-  - click=8.1.3=py310h2ec42d9_0
-  - coloredlogs=15.0.1=pyhd8ed1ab_3
-  - colormath=3.0.0=py_2
-  - commonmark=0.9.1=py_0
-  - cryptography=37.0.2=py310h52c3658_0
-  - cycler=0.11.0=pyhd8ed1ab_0
-  - dataclasses=0.8=pyhc8e2a94_3
-  - fonttools=4.33.3=py310h6c45266_0
-  - freetype=2.10.4=h4cff582_1
-  - future=0.18.2=py310h2ec42d9_5
-  - giflib=5.2.1=hbcb3906_2
-  - humanfriendly=10.0=py310h2ec42d9_2
-  - idna=3.3=pyhd8ed1ab_0
-  - importlib-metadata=4.11.4=py310h2ec42d9_0
-  - jinja2=3.1.2=pyhd8ed1ab_1
-  - jpeg=9e=h5eb16cf_1
-  - kiwisolver=1.4.3=py310habb735a_0
-  - lcms2=2.12=h577c468_0
-  - lerc=3.0=he49afe7_0
-  - libblas=3.9.0=15_osx64_openblas
-  - libbrotlicommon=1.0.9=h5eb16cf_7
-  - libbrotlidec=1.0.9=h5eb16cf_7
-  - libbrotlienc=1.0.9=h5eb16cf_7
-  - libcblas=3.9.0=15_osx64_openblas
-  - libcxx=14.0.5=hce7ea42_1
-  - libdeflate=1.12=hac89ed1_0
-  - libffi=3.4.2=h0d85af4_5
-  - libgfortran=5.0.0=9_3_0_h6c81a4c_23
-  - libgfortran5=9.3.0=h6c81a4c_23
-  - liblapack=3.9.0=15_osx64_openblas
-  - libopenblas=0.3.20=openmp_hb3cd9ec_0
-  - libpng=1.6.37=h7cec526_2
-  - libtiff=4.4.0=h9847915_1
-  - libwebp=1.2.2=h28dabe5_0
-  - libwebp-base=1.2.2=h0d85af4_1
-  - libxcb=1.13=h0d85af4_1004
-  - libzlib=1.2.12=hfe4f2af_1
-  - llvm-openmp=14.0.4=ha654fa7_0
-  - lz4-c=1.9.3=he49afe7_1
-  - lzstring=1.0.4=py_1001
-  - markdown=3.3.7=pyhd8ed1ab_0
-  - markupsafe=2.1.1=py310h1961e1f_1
-  - matplotlib-base=3.5.2=py310h4510841_0
-  - multiqc=1.12=pyhdfd78af_0
-  - munkres=1.1.4=pyh9f0ad1d_0
-  - ncurses=6.3=h96cf925_1
-  - networkx=2.8.4=pyhd8ed1ab_0
-  - numpy=1.22.4=py310hed37afb_0
-  - openjpeg=2.4.0=h6e7aa92_1
-  - openssl=1.1.1o=hfe4f2af_0
-  - packaging=21.3=pyhd8ed1ab_0
-  - pillow=9.1.1=py310hb3240ae_1
-  - pip=22.1.2=pyhd8ed1ab_0
-  - pthread-stubs=0.4=hc929b4f_1001
-  - pycparser=2.21=pyhd8ed1ab_0
-  - pygments=2.12.0=pyhd8ed1ab_0
-  - pyopenssl=22.0.0=pyhd8ed1ab_0
-  - pyparsing=3.0.9=pyhd8ed1ab_0
-  - pysocks=1.7.1=py310h2ec42d9_5
-  - python=3.10.5=hdaaf3db_0_cpython
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python_abi=3.10=2_cp310
-  - pyyaml=6.0=py310h1961e1f_4
-  - readline=8.1.2=h3899abd_0
-  - requests=2.28.0=pyhd8ed1ab_0
-  - rich=12.4.4=pyhd8ed1ab_0
-  - setuptools=62.6.0=py310h2ec42d9_0
-  - simplejson=3.17.6=py310h1961e1f_1
-  - six=1.16.0=pyh6c4a22f_0
-  - spectra=0.0.11=py_1
-  - sqlite=3.38.5=hd9f0692_0
-  - tk=8.6.12=h5dbffcc_0
-  - typing_extensions=4.2.0=pyha770c72_1
-  - tzdata=2022a=h191b570_0
-  - unicodedata2=14.0.0=py310h1961e1f_1
-  - urllib3=1.26.9=pyhd8ed1ab_0
-  - wheel=0.37.1=pyhd8ed1ab_0
-  - xorg-libxau=1.0.9=h35c211d_0
-  - xorg-libxdmcp=1.1.3=h35c211d_0
-  - xz=5.2.5=haf1e3a3_1
-  - yaml=0.2.5=h0d85af4_2
-  - zipp=3.8.0=pyhd8ed1ab_0
-  - zlib=1.2.12=hfe4f2af_1
-  - zstd=1.5.2=ha9df2e0_1

workflow/environments/osx/rqc-tools_v.2023.03.yaml

+name: rqc-tools_v.2023.03
+channels:
+  - conda-forge
+  - bioconda
+  - defaults
+dependencies:
+  - bowtie=1.3.1=py310h6e42bf5_4
+  - bowtie2=2.5.1=py310h7d4de36_0
+  - brotli=1.0.9=hb7f2c08_8
+  - brotli-bin=1.0.9=hb7f2c08_8
+  - brotlipy=0.7.0=py310h90acd4f_1005
+  - bwa=0.7.17=h1f540d2_9
+  - bzip2=1.0.8=h0d85af4_4
+  - ca-certificates=2022.12.7=h033912b_0
+  - certifi=2022.12.7=pyhd8ed1ab_0
+  - cffi=1.15.1=py310ha78151a_3
+  - charset-normalizer=2.1.1=pyhd8ed1ab_0
+  - click=8.1.3=unix_pyhd8ed1ab_2
+  - coloredlogs=15.0.1=pyhd8ed1ab_3
+  - colormath=3.0.0=py_2
+  - contourpy=1.0.7=py310ha23aa8a_0
+  - cryptography=40.0.1=py310hdd0c95c_0
+  - cycler=0.11.0=pyhd8ed1ab_0
+  - expat=2.5.0=hf0c8a7f_0
+  - fastq-screen=0.15.2=pl5321hdfd78af_0
+  - fastqc=0.12.1=hdfd78af_0
+  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
+  - font-ttf-inconsolata=3.000=h77eed37_0
+  - font-ttf-source-code-pro=2.038=h77eed37_0
+  - font-ttf-ubuntu=0.83=hab24e00_0
+  - fontconfig=2.14.2=h5bb23bf_0
+  - fonts-conda-ecosystem=1=0
+  - fonts-conda-forge=1=0
+  - fonttools=4.39.2=py310h90acd4f_0
+  - freetype=2.12.1=h3f81eb7_1
+  - future=0.18.3=pyhd8ed1ab_0
+  - giflib=5.2.1=hb7f2c08_3
+  - humanfriendly=10.0=py310h2ec42d9_4
+  - icu=72.1=h7336db1_0
+  - idna=3.4=pyhd8ed1ab_0
+  - importlib-metadata=6.1.0=pyha770c72_0
+  - jinja2=3.1.2=pyhd8ed1ab_1
+  - kiwisolver=1.4.4=py310ha23aa8a_1
+  - lcms2=2.15=h2dcdeff_1
+  - lerc=4.0.0=hb486fe8_0
+  - libblas=3.9.0=16_osx64_openblas
+  - libbrotlicommon=1.0.9=hb7f2c08_8
+  - libbrotlidec=1.0.9=hb7f2c08_8
+  - libbrotlienc=1.0.9=hb7f2c08_8
+  - libcblas=3.9.0=16_osx64_openblas
+  - libcxx=15.0.7=h71dddab_0
+  - libdeflate=1.18=hac1461d_0
+  - libffi=3.4.2=h0d85af4_5
+  - libgd=2.3.3=h3d994df_6
+  - libgfortran=5.0.0=11_3_0_h97931a8_31
+  - libgfortran5=12.2.0=he409387_31
+  - libiconv=1.17=hac89ed1_0
+  - libjpeg-turbo=2.1.5.1=hb7f2c08_0
+  - liblapack=3.9.0=16_osx64_openblas
+  - libopenblas=0.3.21=openmp_h429af6e_3
+  - libpng=1.6.39=ha978bb4_0
+  - libsqlite=3.40.0=ha978bb4_0
+  - libtiff=4.5.0=hedf67fa_6
+  - libwebp=1.3.0=ha9aa8fa_0
+  - libwebp-base=1.3.0=hb7f2c08_0
+  - libxcb=1.13=h0d85af4_1004
+  - libzlib=1.2.13=hfd90126_4
+  - llvm-openmp=16.0.0=h61d9ccf_0
+  - lzstring=1.0.4=py_1001
+  - markdown=3.4.3=pyhd8ed1ab_0
+  - markdown-it-py=2.2.0=pyhd8ed1ab_0
+  - markupsafe=2.1.2=py310h90acd4f_0
+  - matplotlib-base=3.7.1=py310he725631_0
+  - mdurl=0.1.0=pyhd8ed1ab_0
+  - multiqc=1.14=pyhdfd78af_0
+  - munkres=1.0.7=py_1
+  - ncurses=6.3=h96cf925_1
+  - networkx=3.0=pyhd8ed1ab_0
+  - numpy=1.24.2=py310h788a5b3_0
+  - openjdk=17.0.3=hbc0c0cd_6
+  - openjpeg=2.5.0=h13ac156_2
+  - openssl=3.1.0=hfd90126_0
+  - packaging=23.0=pyhd8ed1ab_0
+  - perl=5.32.1=2_h0d85af4_perl5
+  - perl-gd=2.76=pl5321hb8176d5_1
+  - perl-gdgraph=1.54=pl5321hdfd78af_1
+  - perl-gdtextutil=0.86=pl5321ha5712d3_7
+  - pillow=9.4.0=py310h6b2f720_2
+  - pip=23.0.1=pyhd8ed1ab_0
+  - pthread-stubs=0.4=hc929b4f_1001
+  - pycparser=2.21=pyhd8ed1ab_0
+  - pygments=2.14.0=pyhd8ed1ab_0
+  - pyopenssl=23.1.0=pyhd8ed1ab_0
+  - pyparsing=3.0.9=pyhd8ed1ab_0
+  - pysocks=1.7.1=pyha2e5f31_6
+  - python=3.10.10=he7542f4_0_cpython
+  - python-dateutil=2.8.2=pyhd8ed1ab_0
+  - python_abi=3.10=3_cp310
+  - pyyaml=6.0=py310h90acd4f_5
+  - readline=8.2=h9e318b2_1
+  - requests=2.28.2=pyhd8ed1ab_0
+  - rich=13.3.3=pyhd8ed1ab_0
+  - rich-click=1.6.1=pyhd8ed1ab_0
+  - setuptools=67.6.0=pyhd8ed1ab_0
+  - simplejson=3.18.4=py310h90acd4f_0
+  - six=1.16.0=pyh6c4a22f_0
+  - spectra=0.0.11=py_1
+  - tbb=2021.8.0=hb8565cd_0
+  - tk=8.6.12=h5dbffcc_0
+  - typing_extensions=4.5.0=pyha770c72_0
+  - tzdata=2023b=h71feb2d_0
+  - unicodedata2=15.0.0=py310h90acd4f_0
+  - urllib3=1.26.15=pyhd8ed1ab_0
+  - wheel=0.40.0=pyhd8ed1ab_0
+  - xorg-libxau=1.0.9=h35c211d_0
+  - xorg-libxdmcp=1.1.3=h35c211d_0
+  - xz=5.2.6=h775f41a_0
+  - yaml=0.2.5=h0d85af4_2
+  - zipp=3.15.0=pyhd8ed1ab_0
+  - zlib=1.2.13=hfd90126_4
+  - zstd=1.5.2=hbc0c0cd_6
+prefix: /Users/2021nf001/miniconda3/envs/rqc-tools_v.2023.03