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TRANSVIHMI
nfernandez
Reads_Quality_Control
Commits
5bce97ef
Commit
5bce97ef
authored
3 years ago
by
Nicolas FERNANDEZ NUÑEZ
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add --strip-cpmonents=2 to tar options to resolve issue with bowtie2.tar.gz extraction
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060194fa
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5bce97ef
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@@ -63,7 +63,7 @@ echo ""
echo
"##### BOWTIE2 INDEXES EXTRATION #####"
echo
"---------------------------------"
echo
${
WORKDIR
}
tar
--strip-components
=
2
-xzvf
${
WORKDIR
}
/resources/databases/bowtie2.tar.gz resources/databases/
tar
--strip-components
=
2
-xzvf
${
WORKDIR
}
/resources/databases/bowtie2.tar.gz
-C
${
WORKDIR
}
/
resources/databases/
echo
"________________________________________________________________________"
###### Call snakemake pipeline #####
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