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Commit 5bce97ef authored by Nicolas FERNANDEZ NUÑEZ's avatar Nicolas FERNANDEZ NUÑEZ
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add --strip-cpmonents=2 to tar options to resolve issue with bowtie2.tar.gz extraction

parent 060194fa
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......@@ -63,7 +63,7 @@ echo ""
echo "##### BOWTIE2 INDEXES EXTRATION #####"
echo "---------------------------------"
echo ${WORKDIR}
tar --strip-components=2 -xzvf ${WORKDIR}/resources/databases/bowtie2.tar.gz resources/databases/
tar --strip-components=2 -xzvf ${WORKDIR}/resources/databases/bowtie2.tar.gz -C ${WORKDIR}/resources/databases/
echo "________________________________________________________________________"
###### Call snakemake pipeline #####
......
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