Update RQCP.sh for new bowtie2 indexes extraction

RQCP.sh

@@ -60,9 +60,9 @@ mkdir ${WORKDIR}/results/reads/cutadapt/ ${WORKDIR}/results/reads/sickle-trim/ $
 
 ###### Extract bwa indexes for small genomes #####
 echo ""
-echo "##### BWA INDEXES EXTRATION #####"
+echo "##### BOWTIE2 INDEXES EXTRATION #####"
 echo "---------------------------------"
-tar -xzvf ${WORKDIR}/resources/databases/bwa.tar.gz && rm -f ${WORKDIR}/resources/databases/bwa.tar.gz
+tar -xzvf ${WORKDIR}/resources/databases/bowtie2.tar.gz
 echo "________________________________________________________________________"
 
 ###### Call snakemake pipeline #####