Feat: ver. 2025.01 (Prepare for Snakedeploy)

Run_GeVarLi.sh

configuration/config.yaml

version.txt

workflow/Snakefile

workflow/envs/bamclipper_v.1.0.0.yaml

workflow/envs/bcftools_v.1.20.yaml

workflow/envs/bedtools_v.2.31.1.yaml

workflow/envs/bowtie2_v.2.5.4.yaml

workflow/envs/bwa_v.0.7.18.yaml

workflow/envs/cutadapt_v.4.9.yaml

workflow/envs/fastq-screen_v.0.15.3.yaml

workflow/envs/fastqc_v.0.12.1.yaml

workflow/envs/gawk_v.5.3.0.yaml

workflow/envs/ivar_v.1.4.3.yaml

workflow/envs/minimap2_v.2.28.yaml

workflow/envs/multiqc_v.1.23.yaml

workflow/envs/nextclade_v.3.9.1.yaml

workflow/envs/pangolin_v.4.3.yaml

workflow/envs/samtools_v.1.20.yaml

workflow/envs/sickle-trim_v.1.33.yaml