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__default__:
cpus-per-task : 4
mem-per-cpu : 10G
partition : long
output : 'slurm_logs/stdout/{rule}/{wildcards}.o'
error : 'slurm_logs/error/{rule}/{wildcards}.e'
job-name : '{rule}.{wildcards}'
rename_protein:
cpus-per-task: 1
partition: fast
phobius:
cpus-per-task: 5
mem-per-cpu: 10G
partition: fast
signalP:
cpus-per-task: 10
mem-per-cpu: 10G
partition: fast
targetp:
cpus-per-task: 10
mem-per-cpu: 10G
partition: fast
predgpi:
cpus-per-task: 10
mem-per-cpu: 10G
partition: fast
parse_phobius:
cpus-per-task: 1
partition: fast
parse_signalp:
cpus-per-task: 1
partition: fast
parse_targetp:
cpus-per-task: 1
partition: fast
parse_predgpi:
cpus-per-task: 1
partition: fast
intersect_tools:
cpus-per-task: 1
partition: fast
fasta_intersect:
cpus-per-task: 1
partition: fast
tmhmm:
cpus-per-task: 5
partition: fast
parse_tmhmm:
cpus-per-task: 1
partition: fast
tmhmm_fasta:
cpus-per-task: 1
partition: fast
wolfpsort:
cpus-per-task: 10
mem-per-cpu: 10G
partition: fast
parse_wolfpsort:
cpus-per-task: 1
partition: fast
id_tofasta_secreted:
cpus-per-task: 1
partition: fast
hmmer_pfam:
cpus-per-task: 8
mem-per-cpu: 5G
partition: fast
effectorP:
cpus-per-task: 10
mem-per-cpu: 10G
partition: fast
count_effector:
cpus-per-task: 1
partition: fast
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dbcan2:
cpus-per-task: 2
partition: fast
cazyme_count:
cpus-per-task: 1
partition: fast
orthofinder:
cpus-per-task: 10
partition: fast
orthofinder_parse:
cpus-per-task: 1
partition: fast
interproscan:
cpus-per-task: 4
partition: fast
makeblast_db_phibase:
cpus-per-task: 1
partition: fast
phibase:
cpus-per-task: 1
partition: fast
parse_hmmer:
cpus-per-task: 1
partition: fast