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PHIM
RNAja-pipeline
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51ba1872fa65a9256f437f9dc13772ce9c597741
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6-test-quarto-pour-de
diffex
main
default
protected
snakemake8
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FEA: the option -G of stingtie is now optionnal
main
main
adding more logs error in slurm itrop cluster test
adding some logs because error in slurm
Update README.md
Update README.md
temp some files in rule star_to_diffex
fixing bug in samples order in star_to_diffex rule, taking second column for counts in *ReadsCounts file generated by star
cond-rep instead of cond_rep in erreur message in module.py
refactor + improve DE scripts + create DE snakemake
diffex
diffex
update on DE
test 3 jupyteR DE
minor bug
FIX: fixing bug of samples names into list_for_prep rule
fixing minor bug in output path of rule hseq_todiffex
comment sample_info into the snakefile and minor modifs on readme
Update README.md
Update README.md
docs-TEST : correction of readme sample_info file and conditions file
Merge branch 'sampleinfo-and-singleend' into 'main'
add control on module, remove PAIRED from config, correct some bug, one rule for hisat2_map
addapt code to snakemake 8
snakemake8
snakemake8
minor changes in doc and samples_info files to automatic test
correction de bug: single ne marche pas
changing aurore path to DATA_DIR in config paired and single files
upgrading docs
tested with python3.8 on itrop
changing DATA by DATA_DIR in config.yaml
minors doc installation part into README
typo doc installation part into README
adding first doc installation part into README
Merge branch '6-test-quarto-pour-de' into 'main'
add image
6-test-quarto-p…
6-test-quarto-pour-de
Merge branch '6-test-quarto-pour-de' into 'main'
add logo, change config file, modify multiqc rule
Merge branch '6-test-quarto-pour-de' into 'main'
the names of the output files for diffex contain now the name of the counting tool
Merge branch '6-test-quarto-pour-de' into 'main'
correct bug qui mettait une virgule à la fin de chaque ligne dans le fichier de comptage star_star
Merge branch '5-add-htseq-count-as-counter' into 'main'
remove a print
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