reorganisation + pip

LICENCE

README.rst

RNAja/VERSION

RNAja/__init__.py

RNAja/envs/Singularity.R.def

RNAja/envs/gffread.yaml

RNAja/envs/hisat2.yaml

RNAja/envs/htseq.yaml

RNAja/envs/picard.yaml

RNAja/envs/quality.yaml

RNAja/envs/samtools.yaml

RNAja/envs/stringtie.yaml

RNAja/global_variable.py

RNAja/install_files/config.yaml

RNAja/run.py

RNAja/scripts/edger.Rmd

RNAja/scripts/write_bamfile_info.py

RNAja/scripts/write_fastqtrimmed_info.py

RNAja/snakefiles/Snakefile

RNAja/usefull_function.py