README.md



RNAja


About RNAja
RNAja is a pipeline written in snakemake.
It's aim is to analyse RNAseq data, perform differential expression analysis on it and output a report in Rmarkdown.
The output are compatible with the database diffexDB https://bioinfo-web.mpl.ird.fr/cgi-bin2/microarray/public/diffexdb.cgi.
Homepage:
TODO

Authors

Aurore Comte (IRD)

Some parts of RNAja code and documentation were inspired or came from the pipelines below.


Culebront (Julie Orjuela et al.) https://github.com/SouthGreenPlatform/culebrONT


sRNAmake (Sebastien Cunnac et al.) https://github.com/Aucomte/sRNAmake


BulkRNA (Camille Cohen) https://github.com/CamilleCohen/ProjetTuteur-_BulkRNA


Thanks and aknowledgements
Thanks to Ndomassi Tando (i-Trop IRD) by administration support.
The authors acknowledge the IRD i-Trop HPC https://bioinfo.ird.fr/ (South Green Platform http://www.southgreen.fr) at IRD
Montpellier for providing HPC resources that have contributed to this work.
Thanks to Alexis Dereeper for his help and the developpement of diffexDB https://bioinfo-web.mpl.ird.fr/cgi-bin2/microarray/public/diffexdb.cgi.

License
Licencied under CeCill-C http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.html> and GPLv3.
Intellectual property belongs to IRD and authors.