global_variables.py

from pathlib import Path

DOCS = "https://forge.ird.fr/phim/rnaja-pipeline/README.md"
GIT_URL = "https://forge.ird.fr/phim/rnaja-pipeline"

INSTALL_PATH = Path(__file__).resolve().parent
SINGULARITY_URL_FILES = [('https://itrop.ird.fr/RNAja_utilities/Singularity.RNAja.sif',
                          'INSTALL_PATH/containers/Singularity.RNAja.sif'),
                         ]

DATATEST_URL_FILES = ("https://itrop.ird.fr/RNAja_utilities/DATA_TEST.tar.gz", "DATA_TEST.tar.gz")

ALLOW_FASTQ_EXT = (".fastq", ".fq", ".fq.gz", ".fastq.gz")