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Commit b7ac3d33 authored by aurore.comte_ird.fr's avatar aurore.comte_ird.fr
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update

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auspice/RYMV-madagascar.json
+ 4643
− 3845
View file @ b7ac3d33
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data/OUTPUT_NODE_DATA_Mg94
+ 2
− 2
View file @ b7ac3d33
......@@ -4,7 +4,7 @@
"program": "augur",
"version": "23.0.0"
},
"mcc_file": "data/Mg94_discrete_mcct",
"mcc_file": "Mg94_discrete_mcct",
"nodes": {
"1989Mg1cp.seq": {
"clock_length": 0.37189110298136896,
......@@ -4571,4 +4571,4 @@
"posterior": 0.17852684144818975
}
}
}
\ No newline at end of file
}
data/metadata_updated_country_loc.tsv
+ 95
− 95
View file @ b7ac3d33
strain latMg longMg location date
1989Mg1cp.seq -17.8 48.1 Alaotra-Mangoro 1989
1991Mg2cp.seq -16.1 46.8 Boeny 1991
1991Mg3cp.seq -18.5 47.3 Analamanga 1991
1991Mg4cp.seq -18.5 47.3 Analamanga 1991
1991Mg5cp.seq -16.1 46.8 Boeny 1991
1991Mg6cp.seq -17.8 48.1 Alaotra-Mangoro 1991
2003Mg10cp.seq -15.6 47.6 Sofia 2003
2003Mg11cp.seq -16.1 46.6 Boeny 2003
2003Mg12cp.seq -16.0 46.6 Boeny 2003
2003Mg13cp.seq -14.6 49.7 Sava 2003
2003Mg14cp.seq -13.9 50.1 Sava 2003
2003Mg15cp.seq -14.4 49.7 Sava 2003
2003Mg16cp.seq -16.1 46.8 Boeny 2003
2003Mg35cp.seq -16.5 46.8 Boeny 2003
2003Mg40cp.seq -15.8 46.4 Boeny 2003
2003Mg41cp.seq -15.0 48.0 Sofia 2003
2003Mg42cp.seq -16.2 47.7 Sofia 2003
2003Mg43cp.seq -15.8 46.8 Boeny 2003
2003Mg44cp.seq -16.1 47.6 Sofia 2003
2003Mg45cp.seq -16.4 46.7 Boeny 2003
2003Mg46cp.seq -15.9 47.3 Sofia 2003
2003Mg47cp.seq -15.9 46.6 Boeny 2003
2003Mg48cp.seq -15.8 46.9 Boeny 2003
2003Mg49cp.seq -15.7 46.6 Boeny 2003
2003Mg50cp.seq -14.6 50.0 Sava 2003
2003Mg51cp.seq -14.3 49.8 Sava 2003
2003Mg52cp.seq -14.2 49.8 Sava 2003
2003Mg53cp.seq -14.2 49.6 Sava 2003
2003Mg54cp.seq -14.4 49.6 Sava 2003
2003Mg55cp.seq -14.4 49.6 Sava 2003
2003Mg56cp.seq -13.7 49.9 Sava 2003
2003Mg57cp.seq -13.9 49.8 Sava 2003
2003Mg68cp.seq -16.2 46.4 Boeny 2003
2003Mg69cp.seq -14.2 50.1 Sava 2003
2003Mg70cp.seq -13.9 49.8 Sava 2003
2003Mg71cp.seq -14.3 50.1 Sava 2003
2003Mg410cp.seq -16.1 46.8 Boeny 2003
2003Mg419cp.seq -16.1 46.8 Boeny 2003
2004Mg67cp.seq -19.6 45.4 Menabe 2004
2004Mg17cp.seq -14.9 50.1 Sava 2004
2004Mg18cp.seq -14.4 50.1 Sava 2004
2004Mg19cp.seq -21.7 43.6 Atsimo-Andrefana 2004
2004Mg20cp.seq -19.6 45.4 Menabe 2004
2004Mg21cp.seq -17.9 48.4 Alaotra-Mangoro 2004
2004Mg22cp.seq -18.0 48.2 Alaotra-Mangoro 2004
2004Mg23cp.seq -21.7 48.1 Vatovavy-Fitovinany 2004
2004Mg24cp.seq -22.2 48.0 Vatovavy-Fitovinany 2004
2004Mg25cp.seq -21.5 47.7 Vatovavy-Fitovinany 2004
2004Mg26cp.seq -21.3 47.7 Vatovavy-Fitovinany 2004
2004Mg27cp.seq -20.4 44.3 Menabe 2004
2004Mg28cp.seq -20.5 44.8 Menabe 2004
2004Mg29cp.seq -20.0 45.6 Menabe 2004
2004Mg30cp.seq -17.9 48.6 Alaotra-Mangoro 2004
2004Mg31cp.seq -17.9 48.3 Alaotra-Mangoro 2004
2004Mg32cp.seq -21.1 48.2 Vatovavy-Fitovinany 2004
2004Mg33cp.seq -21.3 48.2 Vatovavy-Fitovinany 2004
2004Mg34cp.seq -21.9 47.7 Vatovavy-Fitovinany 2004
2004Mg58cp.seq -17.5 48.5 Alaotra-Mangoro 2004
2004Mg59cp.seq -18.0 48.5 Alaotra-Mangoro 2004
2004Mg60cp.seq -17.9 48.2 Alaotra-Mangoro 2004
2004Mg61cp.seq -17.6 48.1 Alaotra-Mangoro 2004
2004Mg62cp.seq -17.8 48.1 Alaotra-Mangoro 2004
2004Mg63cp.seq -21.5 48.1 Vatovavy-Fitovinany 2004
2004Mg64cp.seq -21.7 47.7 Vatovavy-Fitovinany 2004
2004Mg65cp.seq -22.4 47.8 Vatovavy-Fitovinany 2004
2004Mg66cp.seq -21.4 47.6 Vatovavy-Fitovinany 2004
2008Mg201cp.seq -15.8 46.8 Boeny 2008
2008Mg202cp.seq -16.1 46.8 Boeny 2008
2010Mg105cp.seq -16.7 49.6 Analanjirofo 2010
2010Mg108cp.seq -17.4 49.3 Analanjirofo 2010
2010Mg119cp.seq -12.5 49.3 Diana 2010
2010Mg123cp.seq -12.3 49.1 Diana 2010
2010Mg124cp.seq -13.1 49.0 Diana 2010
2010Mg125cp.seq -13.6 48.7 Diana 2010
2010Mg126cp.seq -13.9 48.2 Sofia 2010
2010Mg127cp.seq -14.9 47.9 Sofia 2010
2010Mg128cp.seq -15.2 47.9 Sofia 2010
2010Mg147cp.seq -25.0 46.3 Anosy 2010
2010Mg150cp.seq -25.1 46.5 Anosy 2010
2010Mg155cp.seq -24.3 45.7 Androy 2010
2010Mg163cp.seq -23.7 45.8 Anosy 2010
2010Mg165cp.seq -16.9 47.0 Betsiboka 2010
2010Mg210cp.seq -16.1 46.8 Boeny 2010
2014Mg301cp.seq -18.5 47.3 Analamanga 2014
2014Mg302cp.seq -18.5 47.3 Analamanga 2014
2014Mg303cp.seq -18.5 47.3 Analamanga 2014
2014Mg304cp.seq -18.5 47.3 Analamanga 2014
2014Mg341cp.seq -18.5 47.3 Analamanga 2014
2014Mg342cp.seq -18.5 47.3 Analamanga 2014
2014Mg343cp.seq -18.5 47.3 Analamanga 2014
2014Mg344cp.seq -18.5 47.3 Analamanga 2014
2017Mg401cp.seq -16.1 46.6 Boeny 2017
2017Mg402cp.seq -16.1 46.6 Boeny 2017
2017Mg403cp.seq -16.1 46.6 Boeny 2017
strain latMg longMg region location date
1989Mg1cp.seq -17.8 48.1 Alaotra-Mangoro Alaotra-Mangoro 1989
1991Mg2cp.seq -16.1 46.8 Boeny Boeny 1991
1991Mg3cp.seq -18.5 47.3 Analamanga Analamanga 1991
1991Mg4cp.seq -18.5 47.3 Analamanga Analamanga 1991
1991Mg5cp.seq -16.1 46.8 Boeny Boeny 1991
1991Mg6cp.seq -17.8 48.1 Alaotra-Mangoro Alaotra-Mangoro 1991
2003Mg10cp.seq -15.6 47.6 Sofia Sofia 2003
2003Mg11cp.seq -16.1 46.6 Boeny Boeny 2003
2003Mg12cp.seq -16.0 46.6 Boeny Boeny 2003
2003Mg13cp.seq -14.6 49.7 Sava Sava 2003
2003Mg14cp.seq -13.9 50.1 Sava Sava 2003
2003Mg15cp.seq -14.4 49.7 Sava Sava 2003
2003Mg16cp.seq -16.1 46.8 Boeny Boeny 2003
2003Mg35cp.seq -16.5 46.8 Boeny Boeny 2003
2003Mg40cp.seq -15.8 46.4 Boeny Boeny 2003
2003Mg41cp.seq -15.0 48.0 Sofia Sofia 2003
2003Mg42cp.seq -16.2 47.7 Sofia Sofia 2003
2003Mg43cp.seq -15.8 46.8 Boeny Boeny 2003
2003Mg44cp.seq -16.1 47.6 Sofia Sofia 2003
2003Mg45cp.seq -16.4 46.7 Boeny Boeny 2003
2003Mg46cp.seq -15.9 47.3 Sofia Sofia 2003
2003Mg47cp.seq -15.9 46.6 Boeny Boeny 2003
2003Mg48cp.seq -15.8 46.9 Boeny Boeny 2003
2003Mg49cp.seq -15.7 46.6 Boeny Boeny 2003
2003Mg50cp.seq -14.6 50.0 Sava Sava 2003
2003Mg51cp.seq -14.3 49.8 Sava Sava 2003
2003Mg52cp.seq -14.2 49.8 Sava Sava 2003
2003Mg53cp.seq -14.2 49.6 Sava Sava 2003
2003Mg54cp.seq -14.4 49.6 Sava Sava 2003
2003Mg55cp.seq -14.4 49.6 Sava Sava 2003
2003Mg56cp.seq -13.7 49.9 Sava Sava 2003
2003Mg57cp.seq -13.9 49.8 Sava Sava 2003
2003Mg68cp.seq -16.2 46.4 Boeny Boeny 2003
2003Mg69cp.seq -14.2 50.1 Sava Sava 2003
2003Mg70cp.seq -13.9 49.8 Sava Sava 2003
2003Mg71cp.seq -14.3 50.1 Sava Sava 2003
2003Mg410cp.seq -16.1 46.8 Boeny Boeny 2003
2003Mg419cp.seq -16.1 46.8 Boeny Boeny 2003
2004Mg67cp.seq -19.6 45.4 Menabe Menabe 2004
2004Mg17cp.seq -14.9 50.1 Sava Sava 2004
2004Mg18cp.seq -14.4 50.1 Sava Sava 2004
2004Mg19cp.seq -21.7 43.6 Atsimo-Andrefana Atsimo-Andrefana 2004
2004Mg20cp.seq -19.6 45.4 Menabe Menabe 2004
2004Mg21cp.seq -17.9 48.4 Alaotra-Mangoro Alaotra-Mangoro 2004
2004Mg22cp.seq -18.0 48.2 Alaotra-Mangoro Alaotra-Mangoro 2004
2004Mg23cp.seq -21.7 48.1 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2004Mg24cp.seq -22.2 48.0 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2004Mg25cp.seq -21.5 47.7 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2004Mg26cp.seq -21.3 47.7 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2004Mg27cp.seq -20.4 44.3 Menabe Menabe 2004
2004Mg28cp.seq -20.5 44.8 Menabe Menabe 2004
2004Mg29cp.seq -20.0 45.6 Menabe Menabe 2004
2004Mg30cp.seq -17.9 48.6 Alaotra-Mangoro Alaotra-Mangoro 2004
2004Mg31cp.seq -17.9 48.3 Alaotra-Mangoro Alaotra-Mangoro 2004
2004Mg32cp.seq -21.1 48.2 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2004Mg33cp.seq -21.3 48.2 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2004Mg34cp.seq -21.9 47.7 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2004Mg58cp.seq -17.5 48.5 Alaotra-Mangoro Alaotra-Mangoro 2004
2004Mg59cp.seq -18.0 48.5 Alaotra-Mangoro Alaotra-Mangoro 2004
2004Mg60cp.seq -17.9 48.2 Alaotra-Mangoro Alaotra-Mangoro 2004
2004Mg61cp.seq -17.6 48.1 Alaotra-Mangoro Alaotra-Mangoro 2004
2004Mg62cp.seq -17.8 48.1 Alaotra-Mangoro Alaotra-Mangoro 2004
2004Mg63cp.seq -21.5 48.1 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2004Mg64cp.seq -21.7 47.7 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2004Mg65cp.seq -22.4 47.8 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2004Mg66cp.seq -21.4 47.6 Vatovavy-Fitovinany Vatovavy-Fitovinany 2004
2008Mg201cp.seq -15.8 46.8 Boeny Boeny 2008
2008Mg202cp.seq -16.1 46.8 Boeny Boeny 2008
2010Mg105cp.seq -16.7 49.6 Analanjirofo Analanjirofo 2010
2010Mg108cp.seq -17.4 49.3 Analanjirofo Analanjirofo 2010
2010Mg119cp.seq -12.5 49.3 Diana Diana 2010
2010Mg123cp.seq -12.3 49.1 Diana Diana 2010
2010Mg124cp.seq -13.1 49.0 Diana Diana 2010
2010Mg125cp.seq -13.6 48.7 Diana Diana 2010
2010Mg126cp.seq -13.9 48.2 Sofia Sofia 2010
2010Mg127cp.seq -14.9 47.9 Sofia Sofia 2010
2010Mg128cp.seq -15.2 47.9 Sofia Sofia 2010
2010Mg147cp.seq -25.0 46.3 Anosy Anosy 2010
2010Mg150cp.seq -25.1 46.5 Anosy Anosy 2010
2010Mg155cp.seq -24.3 45.7 Androy Androy 2010
2010Mg163cp.seq -23.7 45.8 Anosy Anosy 2010
2010Mg165cp.seq -16.9 47.0 Betsiboka Betsiboka 2010
2010Mg210cp.seq -16.1 46.8 Boeny Boeny 2010
2014Mg301cp.seq -18.5 47.3 Analamanga Analamanga 2014
2014Mg302cp.seq -18.5 47.3 Analamanga Analamanga 2014
2014Mg303cp.seq -18.5 47.3 Analamanga Analamanga 2014
2014Mg304cp.seq -18.5 47.3 Analamanga Analamanga 2014
2014Mg341cp.seq -18.5 47.3 Analamanga Analamanga 2014
2014Mg342cp.seq -18.5 47.3 Analamanga Analamanga 2014
2014Mg343cp.seq -18.5 47.3 Analamanga Analamanga 2014
2014Mg344cp.seq -18.5 47.3 Analamanga Analamanga 2014
2017Mg401cp.seq -16.1 46.6 Boeny Boeny 2017
2017Mg402cp.seq -16.1 46.6 Boeny Boeny 2017
2017Mg403cp.seq -16.1 46.6 Boeny Boeny 2017
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