change tree

data/metadata_updated_country_zone.csv

+strain	latMg	longMg	region	location	date
+1989Mg1cp.seq	-17.8	48.1	D	D	1989
+1991Mg2cp.seq	-16.1	46.8	F	F	1991
+1991Mg3cp.seq	-18.5	47.3	D	D	1991
+1991Mg4cp.seq	-18.5	47.3	D	D	1991
+1991Mg5cp.seq	-16.1	46.8	F	F	1991
+1991Mg6cp.seq	-17.8	48.1	D	D	1991
+2003Mg10cp.seq	-15.6	47.6	F	F	2003
+2003Mg11cp.seq	-16.1	46.6	F	F	2003
+2003Mg12cp.seq	-16.0	46.6	F	F	2003
+2003Mg13cp.seq	-14.6	49.7	B	B	2003
+2003Mg14cp.seq	-13.9	50.1	B	B	2003
+2003Mg15cp.seq	-14.4	49.7	B	B	2003
+2003Mg16cp.seq	-16.1	46.8	F	F	2003
+2003Mg35cp.seq	-16.5	46.8	F	F	2003
+2003Mg40cp.seq	-15.8	46.4	F	F	2003
+2003Mg41cp.seq	-15.0	48.0	F	F	2003
+2003Mg42cp.seq	-16.2	47.7	F	F	2003
+2003Mg43cp.seq	-15.8	46.8	F	F	2003
+2003Mg44cp.seq	-16.1	47.6	F	F	2003
+2003Mg45cp.seq	-16.4	46.7	F	F	2003
+2003Mg46cp.seq	-15.9	47.3	F	F	2003
+2003Mg47cp.seq	-15.9	46.6	F	F	2003
+2003Mg48cp.seq	-15.8	46.9	F	F	2003
+2003Mg49cp.seq	-15.7	46.6	F	F	2003
+2003Mg50cp.seq	-14.6	50.0	B	B	2003
+2003Mg51cp.seq	-14.3	49.8	B	B	2003
+2003Mg52cp.seq	-14.2	49.8	B	B	2003
+2003Mg53cp.seq	-14.2	49.6	B	B	2003
+2003Mg54cp.seq	-14.4	49.6	B	B	2003
+2003Mg55cp.seq	-14.4	49.6	B	B	2003
+2003Mg56cp.seq	-13.7	49.9	B	B	2003
+2003Mg57cp.seq	-13.9	49.8	B	B	2003
+2003Mg68cp.seq	-16.2	46.4	F	F	2003
+2003Mg69cp.seq	-14.2	50.1	B	B	2003
+2003Mg70cp.seq	-13.9	49.8	B	B	2003
+2003Mg71cp.seq	-14.3	50.1	B	B	2003
+2003Mg410cp.seq	-16.1	46.8	F	F	2003
+2003Mg419cp.seq	-16.1	46.8	F	F	2003
+2004Mg67cp.seq	-19.6	45.4	G	G	2004
+2004Mg17cp.seq	-14.9	50.1	B	B	2004
+2004Mg18cp.seq	-14.4	50.1	B	B	2004
+2004Mg19cp.seq	-21.7	43.6	G	G	2004
+2004Mg20cp.seq	-19.6	45.4	G	G	2004
+2004Mg21cp.seq	-17.9	48.4	D	D	2004
+2004Mg22cp.seq	-18.0	48.2	D	D	2004
+2004Mg23cp.seq	-21.7	48.1	H	H	2004
+2004Mg24cp.seq	-22.2	48.0	H	H	2004
+2004Mg25cp.seq	-21.5	47.7	H	H	2004
+2004Mg26cp.seq	-21.3	47.7	H	H	2004
+2004Mg27cp.seq	-20.4	44.3	G	G	2004
+2004Mg28cp.seq	-20.5	44.8	G	G	2004
+2004Mg29cp.seq	-20.0	45.6	G	G	2004
+2004Mg30cp.seq	-17.9	48.6	D	D	2004
+2004Mg31cp.seq	-17.9	48.3	D	D	2004
+2004Mg32cp.seq	-21.1	48.2	H	H	2004
+2004Mg33cp.seq	-21.3	48.2	H	H	2004
+2004Mg34cp.seq	-21.9	47.7	H	H	2004
+2004Mg58cp.seq	-17.5	48.5	D	D	2004
+2004Mg59cp.seq	-18.0	48.5	D	D	2004
+2004Mg60cp.seq	-17.9	48.2	D	D	2004
+2004Mg61cp.seq	-17.6	48.1	D	D	2004
+2004Mg62cp.seq	-17.8	48.1	D	D	2004
+2004Mg63cp.seq	-21.5	48.1	H	H	2004
+2004Mg64cp.seq	-21.7	47.7	H	H	2004
+2004Mg65cp.seq	-22.4	47.8	H	H	2004
+2004Mg66cp.seq	-21.4	47.6	H	H	2004
+2008Mg201cp.seq	-15.8	46.8	F	F	2008
+2008Mg202cp.seq	-16.1	46.8	F	F	2008
+2010Mg105cp.seq	-16.7	49.6	D	D	2010
+2010Mg108cp.seq	-17.4	49.3	D	D	2010
+2010Mg119cp.seq	-12.5	49.3	A	A	2010
+2010Mg123cp.seq	-12.3	49.1	A	A	2010
+2010Mg124cp.seq	-13.1	49.0	A	A	2010
+2010Mg125cp.seq	-13.6	48.7	A	A	2010
+2010Mg126cp.seq	-13.9	48.2	A	A	2010
+2010Mg127cp.seq	-14.9	47.9	C	C	2010
+2010Mg128cp.seq	-15.2	47.9	C	C	2010
+2010Mg147cp.seq	-25.0	46.3	I	I	2010
+2010Mg150cp.seq	-25.1	46.5	I	I	2010
+2010Mg155cp.seq	-24.3	45.7	I	I	2010
+2010Mg163cp.seq	-23.7	45.8	I	I	2010
+2010Mg165cp.seq	-16.9	47.0	F	F	2010
+2010Mg210cp.seq	-16.1	46.8	F	F	2010
+2014Mg301cp.seq	-18.5	47.3	D	D	2014
+2014Mg302cp.seq	-18.5	47.3	D	D	2014
+2014Mg303cp.seq	-18.5	47.3	D	D	2014
+2014Mg304cp.seq	-18.5	47.3	D	D	2014
+2014Mg341cp.seq	-18.5	47.3	D	D	2014
+2014Mg342cp.seq	-18.5	47.3	D	D	2014
+2014Mg343cp.seq	-18.5	47.3	D	D	2014
+2014Mg344cp.seq	-18.5	47.3	D	D	2014
+2017Mg401cp.seq	-16.1	46.6	F	F	2017
+2017Mg402cp.seq	-16.1	46.6	F	F	2017
+2017Mg403cp.seq	-16.1	46.6	F	F	2017

results/tree_1.nwk

+((1991Mg5cp.seq:2.61110580,1991Mg2cp.seq:2.61110580)NODE_0000001:3.65089802,(((2004Mg31cp.seq:15.35931080,(1989Mg1cp.seq:0.97931036,(1991Mg6cp.seq:1.13679977,(2004Mg22cp.seq:1.03420845,(2004Mg60cp.seq:0.57802289,(2004Mg61cp.seq:0.15560260,2004Mg62cp.seq:0.15560260)NODE_0000092:0.42162283)NODE_0000091:0.44655669)NODE_0000090:12.25194130)NODE_0000089:1.80702451)NODE_0000088:0.37726446)NODE_0000087:0.77675049,(2004Mg29cp.seq:8.87201236,(((2004Mg34cp.seq:1.48243550,2004Mg24cp.seq:1.48243550)NODE_0000086:2.48797851,((2004Mg32cp.seq:0.75912234,(2004Mg23cp.seq:0.15582133,2004Mg33cp.seq:0.15582133)NODE_0000083:0.03070686)NODE_0000082:1.81721657,(2010Mg155cp.seq:5.09863010,(2010Mg105cp.seq:2.57264100,2010Mg108cp.seq:2.57264100)NODE_0000085:2.67655584)NODE_0000084:2.80913139)NODE_0000081:1.41649618)NODE_0000080:3.74393786,((2004Mg58cp.seq:2.94989609,(2003Mg46cp.seq:0.48291165,2017Mg401cp.seq:13.48565137)NODE_0000073:2.46424846)NODE_0000072:2.25629891,((2004Mg64cp.seq:2.37704464,2004Mg59cp.seq:2.37704464)NODE_0000075:2.21183389,(2004Mg65cp.seq:2.28783145,(2004Mg63cp.seq:1.56477371,(2004Mg66cp.seq:0.71972458,(2004Mg26cp.seq:0.28438355,2004Mg25cp.seq:0.28438355)NODE_0000079:0.43534102)NODE_0000078:0.98766312)NODE_0000077:0.78748598)NODE_0000076:1.73133140)NODE_0000074:1.61458423)NODE_0000071:1.86199680)NODE_0000070:1.80382056)NODE_0000069:7.26404893)NODE_0000068:2.19854334,(((1991Mg3cp.seq:0.31081445,1991Mg4cp.seq:0.31081445)NODE_0000060:1.64859515,((2014Mg303cp.seq:1.67775411,2014Mg341cp.seq:1.67775411)NODE_0000062:3.00297962,(2014Mg301cp.seq:3.58352075,((2014Mg344cp.seq:1.21568978,2014Mg343cp.seq:1.21568978)NODE_0000065:2.14101435,(2014Mg342cp.seq:2.15802201,(2014Mg304cp.seq:1.85586464,2014Mg302cp.seq:1.85586464)NODE_0000067:0.29200480)NODE_0000066:1.16667099)NODE_0000064:0.42311112)NODE_0000063:1.02709880)NODE_0000061:19.83944565)NODE_0000059:2.12528955,((2004Mg21cp.seq:2.05203668,2004Mg30cp.seq:2.05203668)NODE_0000058:11.43899625,((2003Mg68cp.seq:6.51999958,((2010Mg147cp.seq:3.57738495,(2010Mg163cp.seq:2.21213633,2010Mg150cp.seq:2.21213633)NODE_0000009:1.75885354)NODE_0000008:8.63453687,(((2003Mg52cp.seq:1.58113368,2003Mg57cp.seq:1.58113368)NODE_0000017:2.00440737,((2003Mg56cp.seq:2.15243593,(2003Mg55cp.seq:0.93753829,2003Mg54cp.seq:0.93753829)NODE_0000014:1.25418910)NODE_0000013:0.79972922,(2003Mg53cp.seq:1.54270843,(2003Mg50cp.seq:1.01763410,2003Mg69cp.seq:1.01763410)NODE_0000016:0.53650132)NODE_0000015:1.43291308)NODE_0000012:0.67810610)NODE_0000011:1.56881065,((2004Mg17cp.seq:2.31185002,(2004Mg18cp.seq:1.99994137,(2003Mg51cp.seq:0.31627054,2003Mg14cp.seq:0.31627054)NODE_0000021:0.68431040)NODE_0000020:0.32428771)NODE_0000019:2.01602853,(2003Mg15cp.seq:0.77182821,(2003Mg13cp.seq:0.47582255,(2003Mg70cp.seq:0.16729356,2003Mg71cp.seq:0.16729356)NODE_0000024:0.32606970)NODE_0000023:0.31529807)NODE_0000022:2.71995896)NODE_0000018:1.93435495)NODE_0000010:0.41192142)NODE_0000007:1.53913935)NODE_0000006:2.59861435,((2004Mg67cp.seq:0.50786785,2004Mg20cp.seq:0.50786785)NODE_0000057:7.45185921,((((2003Mg47cp.seq:0.63821609,2003Mg12cp.seq:0.63821609)NODE_0000029:1.75772636,((2017Mg402cp.seq:3.26959189,2017Mg403cp.seq:3.26959189)NODE_0000033:9.93494625,(2010Mg210cp.seq:6.05516827,(2008Mg201cp.seq:1.74447079,2008Mg202cp.seq:1.74447079)NODE_0000032:2.60150162)NODE_0000031:0.14936987)NODE_0000030:2.45575401)NODE_0000028:2.10816330,(2003Mg11cp.seq:2.16570032,(2010Mg125cp.seq:6.10269934,((2010Mg128cp.seq:2.86479858,2010Mg126cp.seq:2.86479858)NODE_0000040:2.92990387,((2010Mg127cp.seq:3.25255888,2010Mg123cp.seq:3.25255888)NODE_0000038:0.96226023,(2010Mg165cp.seq:2.88025474,2010Mg119cp.seq:2.88025474)NODE_0000039:1.48223018)NODE_0000037:1.28950277)NODE_0000036:0.78166961)NODE_0000035:2.50003510)NODE_0000034:2.16572102)NODE_0000027:2.74207338,((2010Mg124cp.seq:9.61683254,(2003Mg16cp.seq:2.21469739,(2004Mg28cp.seq:1.61036239,(2004Mg19cp.seq:0.20434532,2004Mg27cp.seq:0.20434532)NODE_0000056:0.85494848)NODE_0000055:1.80611145)NODE_0000054:0.89614005)NODE_0000053:2.31430981,((2003Mg10cp.seq:1.55351811,(2003Mg49cp.seq:0.92564783,2003Mg41cp.seq:0.92564783)NODE_0000044:0.64187846)NODE_0000043:2.69655753,((2003Mg44cp.seq:1.11600249,2003Mg45cp.seq:1.11600249)NODE_0000052:2.61456231,((2003Mg419cp.seq:1.91975507,2003Mg410cp.seq:1.91975507)NODE_0000051:1.34936549,((2003Mg35cp.seq:1.07558593,2003Mg40cp.seq:1.07558593)NODE_0000048:1.37083687,(2003Mg48cp.seq:1.44589079,(2003Mg43cp.seq:0.90360920,2003Mg42cp.seq:0.90360920)NODE_0000050:0.52188632)NODE_0000049:0.98469751)NODE_0000047:0.91618290)NODE_0000046:0.40822539)NODE_0000045:0.62585311)NODE_0000042:1.24573695)NODE_0000041:1.57938650)NODE_0000026:0.08989944)NODE_0000025:2.51818564)NODE_0000005:2.77590820)NODE_0000004:3.26626309)NODE_0000003:2.17382316)NODE_0000002:0.00795188)NODE_0000000:0.00100000;

scripts/OUTPUT_TREE_1

+((1991Mg5cp.seq:2.82472803,1991Mg2cp.seq:2.82472803)NODE_0000001:10.54403679,(((2004Mg31cp.seq:16.18345267,(1989Mg1cp.seq:0.78356460,(1991Mg6cp.seq:1.02447446,(2004Mg22cp.seq:1.03420845,(2004Mg60cp.seq:0.57802289,(2004Mg61cp.seq:0.16606588,2004Mg62cp.seq:0.16606588)NODE_0000092:0.41195701)NODE_0000091:0.45618556)NODE_0000090:12.99026601)NODE_0000089:1.75909014)NODE_0000088:0.39988807)NODE_0000087:3.37082877,(2004Mg29cp.seq:12.03667966,(((2004Mg34cp.seq:1.45793880,2004Mg24cp.seq:1.45793880)NODE_0000086:2.54608819,((2004Mg32cp.seq:0.79388227,(2004Mg23cp.seq:0.15737631,2004Mg33cp.seq:0.15737631)NODE_0000083:0.63650596)NODE_0000082:1.69960934,(2010Mg155cp.seq:5.19008235,(2010Mg105cp.seq:2.89352810,2010Mg108cp.seq:2.89352810)NODE_0000085:2.29655425)NODE_0000084:3.30340926)NODE_0000081:1.51053539)NODE_0000080:6.16283813,((2004Mg58cp.seq:3.95170178,(2003Mg46cp.seq:0.42605711,2017Mg401cp.seq:14.42605711)NODE_0000073:2.52564466)NODE_0000072:3.27314447,((2004Mg64cp.seq:3.50534102,2004Mg59cp.seq:3.50534102)NODE_0000075:1.99029081,(2004Mg65cp.seq:2.49762478,(2004Mg63cp.seq:1.68985123,(2004Mg66cp.seq:0.71972458,(2004Mg26cp.seq:0.28438355,2004Mg25cp.seq:0.28438355)NODE_0000079:0.43534102)NODE_0000078:0.97012665)NODE_0000077:0.80777355)NODE_0000076:2.99800706)NODE_0000074:1.72921441)NODE_0000071:2.94201888)NODE_0000070:1.86981453)NODE_0000069:7.51760178)NODE_0000068:2.23525352,(((1991Mg3cp.seq:0.32333705,1991Mg4cp.seq:0.32333705)NODE_0000060:1.28695448,((2014Mg303cp.seq:1.66599718,2014Mg341cp.seq:1.66599718)NODE_0000062:3.19896077,(2014Mg301cp.seq:3.86843019,((2014Mg344cp.seq:1.18286803,2014Mg343cp.seq:1.18286803)NODE_0000065:2.14886410,(2014Mg342cp.seq:2.13764730,(2014Mg304cp.seq:1.86601722,2014Mg302cp.seq:1.86601722)NODE_0000067:0.27163009)NODE_0000066:1.19408483)NODE_0000064:0.53669805)NODE_0000063:0.99652777)NODE_0000061:19.74533357)NODE_0000059:2.83282250,((2004Mg21cp.seq:2.12250235,2004Mg30cp.seq:2.12250235)NODE_0000058:12.24421766,((2003Mg68cp.seq:7.20775215,((2010Mg147cp.seq:3.87488733,(2010Mg163cp.seq:2.16408506,2010Mg150cp.seq:2.16408506)NODE_0000009:1.71080227)NODE_0000008:8.82595911,(((2003Mg52cp.seq:1.62142603,2003Mg57cp.seq:1.62142603)NODE_0000017:2.07101742,((2003Mg56cp.seq:2.21416459,(2003Mg55cp.seq:0.92354569,2003Mg54cp.seq:0.92354569)NODE_0000014:1.29061891)NODE_0000013:0.77624487,(2003Mg53cp.seq:1.57908868,(2003Mg50cp.seq:1.01767999,2003Mg69cp.seq:1.01767999)NODE_0000016:0.56140870)NODE_0000015:1.41132079)NODE_0000012:0.70203399)NODE_0000011:1.57569884,((2004Mg17cp.seq:2.37492742,(2004Mg18cp.seq:1.96377356,(2003Mg51cp.seq:0.26132532,2003Mg14cp.seq:0.26132532)NODE_0000021:0.70244824)NODE_0000020:0.41115386)NODE_0000019:2.00641068,(2003Mg15cp.seq:0.80866133,(2003Mg13cp.seq:0.49336326,(2003Mg70cp.seq:0.16457481,2003Mg71cp.seq:0.16457481)NODE_0000024:0.32878845)NODE_0000023:0.31529807)NODE_0000022:2.57267678)NODE_0000018:1.88680420)NODE_0000010:0.43270413)NODE_0000007:1.50690572)NODE_0000006:3.11111509,((2004Mg67cp.seq:0.56078826,2004Mg20cp.seq:0.56078826)NODE_0000057:7.67139828,((((2003Mg47cp.seq:0.59329435,2003Mg12cp.seq:0.59329435)NODE_0000029:1.69608640,((2017Mg402cp.seq:3.91471085,2017Mg403cp.seq:3.91471085)NODE_0000033:9.37832944,(2010Mg210cp.seq:6.16264010,(2008Mg201cp.seq:1.69987707,2008Mg202cp.seq:1.69987707)NODE_0000032:2.46276303)NODE_0000031:0.13040018)NODE_0000030:2.99634047)NODE_0000028:2.07940204,(2003Mg11cp.seq:2.11427657,(2010Mg125cp.seq:6.40154178,((2010Mg128cp.seq:2.86479858,2010Mg126cp.seq:2.86479858)NODE_0000040:2.77392399,((2010Mg127cp.seq:3.42151909,2010Mg123cp.seq:3.42151909)NODE_0000038:0.91664942,(2010Mg165cp.seq:2.88578943,2010Mg119cp.seq:2.88578943)NODE_0000039:1.45237909)NODE_0000037:1.30055405)NODE_0000036:0.76281921)NODE_0000035:2.71273479)NODE_0000034:2.25450621)NODE_0000027:2.78325774,((2010Mg124cp.seq:10.21956108,(2003Mg16cp.seq:2.36806514,(2004Mg28cp.seq:1.64794714,(2004Mg19cp.seq:0.19967649,2004Mg27cp.seq:0.19967649)NODE_0000056:1.44827066)NODE_0000055:1.72011800)NODE_0000054:0.85149594)NODE_0000053:2.37652209,((2003Mg10cp.seq:1.55585150,(2003Mg49cp.seq:0.91397304,2003Mg41cp.seq:0.91397304)NODE_0000044:0.64187846)NODE_0000043:2.81215720,((2003Mg44cp.seq:1.12059055,2003Mg45cp.seq:1.12059055)NODE_0000052:2.64833233,((2003Mg419cp.seq:2.01291569,2003Mg410cp.seq:2.01291569)NODE_0000051:1.33162491,((2003Mg35cp.seq:1.04443432,2003Mg40cp.seq:1.04443432)NODE_0000048:1.41664774,(2003Mg48cp.seq:1.47416395,(2003Mg43cp.seq:0.92646148,2003Mg42cp.seq:0.92646148)NODE_0000050:0.54770248)NODE_0000049:0.98691811)NODE_0000047:0.88345854)NODE_0000046:0.42438227)NODE_0000045:0.59908583)NODE_0000042:1.22807448)NODE_0000041:1.55595735)NODE_0000026:0.08014602)NODE_0000025:3.08668070)NODE_0000005:3.04785277)NODE_0000004:3.07639401)NODE_0000003:4.34642093)NODE_0000002:4.57922987)NODE_0000000:0.00100000;