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Commit 39775792 authored by jacques.dainat_ird.fr's avatar jacques.dainat_ird.fr
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remove useless file

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data/bakta_db/db.tar.gz deleted 100644 → 0
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pipeline_report/execution_report.html deleted 100644 → 0
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pipeline_report/execution_report.html.1 deleted 100644 → 0
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pipeline_report/execution_timeline.html deleted 100644 → 0
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<!doctype html>
<!--
~ Copyright 2013-2019, Centre for Genomic Regulation (CRG)
~
~ Licensed under the Apache License, Version 2.0 (the "License");
~ you may not use this file except in compliance with the License.
~ You may obtain a copy of the License at
~
~ http://www.apache.org/licenses/LICENSE-2.0
~
~ Unless required by applicable law or agreed to in writing, software
~ distributed under the License is distributed on an "AS IS" BASIS,
~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
~ See the License for the specific language governing permissions and
~ limitations under the License.
-->
<html>
<head>
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<script type="text/javascript">
var prot = (("https:" == document.location.protocol) ? "https://" : "http://");
document.write(unescape("%3Cscript src='" + prot + "code.jquery.com/jquery-latest.min.js' type='text/javascript' %3E%3C/script%3E"));
document.write(unescape("%3Cscript src='" + prot + "d3js.org/d3.v3.min.js' charset='utf-8' type='text/javascript' %3E%3C/script%3E"));
document.write(unescape("%3Cscript src='" + prot + "cdn.rawgit.com/nextflow-io/d3-timeline/82622c4cc35bac7283b3a317826b0709ac1ae476/src/d3-timeline.js' type='text/javascript' %3E%3C/script%3E"));
</script>
<style type="text/css">
* {
font-family: 'Lato', 'Helvetica Neue', Arial, Helvetica, sans-serif;
}
.axis path,
.axis line {
fill: none;
stroke: black;
shape-rendering: crispEdges;
}
.axis text {
font-size: 10px;
}
div#timeline g text {
font-size: 13px;
}
text.timeline-label {
font-size: 13px;
}
#timeline2 .axis {
transform: translate(0px,30px);
-ms-transform: translate(0px,30px); /* IE 9 */
-webkit-transform: translate(0px,30px); /* Safari and Chrome */
-o-transform: translate(0px,30px); /* Opera */
-moz-transform: translate(0px,30px); /* Firefox */
}
.coloredDiv {
height:20px; width:20px; float:left;
}
#footer {
padding-top: 3em; color: #bfbfbf; font-size: 13px;
}
#footer a:visited {
color: #bfbfbf;
text-decoration: underline;
}
</style>
<script type="text/javascript">
var handler=null;
// see https://github.com/mbostock/d3/wiki/Ordinal-Scales#category20c
var colors = d3.scale.category20c().domain(d3.range(0,20)).range()
function c0(index) { return "#9c9c9c"; }
function c1(index) { return "#bdbdbd"; }
function c2(index) { return colors[index % 16]; } // <-- note: uses only the first 16 colors
var elapsed="14m 26s"
var beginningMillis=1673645112484;
var endingMillis=1673645978748;
var data=[
]
function getTickFormat() {
var MIN = 1000 * 60
var HOUR = MIN * 60
var DAY = HOUR * 24
var delta = (endingMillis - beginningMillis)
if( delta < 2 * MIN ) {
return {
format: d3.time.format("%S"),
tickTime: d3.time.seconds,
tickInterval: 5,
tickSize: 6
}
}
if( delta < 2 * HOUR ) {
return {
format: d3.time.format("%M"),
tickTime: d3.time.minutes,
tickInterval: 5,
tickSize: 6
}
}
if( delta < 2 * DAY ) {
return {
format: d3.time.format("%H:%M"),
tickTime: d3.time.hours,
tickInterval: 1,
tickSize: 6
}
}
if( delta <= 7 * DAY ) {
return {
format: d3.time.format("%b %e %H:%M"),
tickTime: d3.time.hours,
tickInterval: 6,
tickSize: 6
}
}
return {
format: d3.time.format("%b %e"),
tickTime: d3.time.days,
tickInterval: 1,
tickSize: 6
}
}
function getLabelMargin(scale) {
$('<span class="labelSpan" style="display: none"></span>').appendTo('body');
var labelMargin = 0
$.each(data, function (key, value) {
labelMargin = Math.max(labelMargin, $('.labelSpan').html(value.label).width());
});
$('.labelSpan').remove();
return (labelMargin * scale);
}
function render() {
handler=null;
$("#timeline").empty()
$('#label_elapsed').text(elapsed)
$('#label_launch').text( d3.time.format('%d %b %Y %H:%M')(new Date(beginningMillis)) )
var width = $(window).width();
var chart = d3.timeline()
.stack() // toggles graph stacking
.margin({left:getLabelMargin(0.85), right:100, top:0, bottom:0})
.tickFormat( getTickFormat() )
.rowSeperators('#f5f5f5')
.showTimeAxisTick()
;
var svg = d3.select("#timeline").append("svg").attr("width", width).datum(data).call(chart);
}
function hrz() {
if( handler != null ) clearTimeout(handler)
handler = setTimeout(render, 150);
}
$(document).ready(render)
$(window).resize(hrz); // resize the applet on window resize
</script>
</head>
<body>
<div>
<h3>Processes execution timeline</h3>
<p>
Launch time: <span id='label_launch'> </span><br>
Elapsed time: <span id='label_elapsed'> </span><br>
Legend: job wall time / memory usage (RAM) <span id='label_legend'> </span>
</p>
<div id="timeline"></div>
</div>
<div id='footer'>
Created with Nextflow -- <a href='http://www.nextflow.io' target='_blank'>http://nextflow.io</a>
</div>
<script type="text/javascript">
var prot = (("https:" == document.location.protocol) ? "https://" : "http://");
document.write(unescape("%3Clink href='" + prot + "fonts.googleapis.com/css?family=Lato' rel='stylesheet' type='text/css' %3E%3C/link%3E"));
</script>
</body>
</html>
pipeline_report/execution_timeline.html.1 deleted 100644 → 0
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− 199
View file @ f3606ed4
<!doctype html>
<!--
~ Copyright 2013-2019, Centre for Genomic Regulation (CRG)
~
~ Licensed under the Apache License, Version 2.0 (the "License");
~ you may not use this file except in compliance with the License.
~ You may obtain a copy of the License at
~
~ http://www.apache.org/licenses/LICENSE-2.0
~
~ Unless required by applicable law or agreed to in writing, software
~ distributed under the License is distributed on an "AS IS" BASIS,
~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
~ See the License for the specific language governing permissions and
~ limitations under the License.
-->
<html>
<head>
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<script type="text/javascript">
var prot = (("https:" == document.location.protocol) ? "https://" : "http://");
document.write(unescape("%3Cscript src='" + prot + "code.jquery.com/jquery-latest.min.js' type='text/javascript' %3E%3C/script%3E"));
document.write(unescape("%3Cscript src='" + prot + "d3js.org/d3.v3.min.js' charset='utf-8' type='text/javascript' %3E%3C/script%3E"));
document.write(unescape("%3Cscript src='" + prot + "cdn.rawgit.com/nextflow-io/d3-timeline/82622c4cc35bac7283b3a317826b0709ac1ae476/src/d3-timeline.js' type='text/javascript' %3E%3C/script%3E"));
</script>
<style type="text/css">
* {
font-family: 'Lato', 'Helvetica Neue', Arial, Helvetica, sans-serif;
}
.axis path,
.axis line {
fill: none;
stroke: black;
shape-rendering: crispEdges;
}
.axis text {
font-size: 10px;
}
div#timeline g text {
font-size: 13px;
}
text.timeline-label {
font-size: 13px;
}
#timeline2 .axis {
transform: translate(0px,30px);
-ms-transform: translate(0px,30px); /* IE 9 */
-webkit-transform: translate(0px,30px); /* Safari and Chrome */
-o-transform: translate(0px,30px); /* Opera */
-moz-transform: translate(0px,30px); /* Firefox */
}
.coloredDiv {
height:20px; width:20px; float:left;
}
#footer {
padding-top: 3em; color: #bfbfbf; font-size: 13px;
}
#footer a:visited {
color: #bfbfbf;
text-decoration: underline;
}
</style>
<script type="text/javascript">
var handler=null;
// see https://github.com/mbostock/d3/wiki/Ordinal-Scales#category20c
var colors = d3.scale.category20c().domain(d3.range(0,20)).range()
function c0(index) { return "#9c9c9c"; }
function c1(index) { return "#bdbdbd"; }
function c2(index) { return colors[index % 16]; } // <-- note: uses only the first 16 colors
var elapsed="1.8s"
var beginningMillis=1673644924819;
var endingMillis=1673644926630;
var data=[
]
function getTickFormat() {
var MIN = 1000 * 60
var HOUR = MIN * 60
var DAY = HOUR * 24
var delta = (endingMillis - beginningMillis)
if( delta < 2 * MIN ) {
return {
format: d3.time.format("%S"),
tickTime: d3.time.seconds,
tickInterval: 5,
tickSize: 6
}
}
if( delta < 2 * HOUR ) {
return {
format: d3.time.format("%M"),
tickTime: d3.time.minutes,
tickInterval: 5,
tickSize: 6
}
}
if( delta < 2 * DAY ) {
return {
format: d3.time.format("%H:%M"),
tickTime: d3.time.hours,
tickInterval: 1,
tickSize: 6
}
}
if( delta <= 7 * DAY ) {
return {
format: d3.time.format("%b %e %H:%M"),
tickTime: d3.time.hours,
tickInterval: 6,
tickSize: 6
}
}
return {
format: d3.time.format("%b %e"),
tickTime: d3.time.days,
tickInterval: 1,
tickSize: 6
}
}
function getLabelMargin(scale) {
$('<span class="labelSpan" style="display: none"></span>').appendTo('body');
var labelMargin = 0
$.each(data, function (key, value) {
labelMargin = Math.max(labelMargin, $('.labelSpan').html(value.label).width());
});
$('.labelSpan').remove();
return (labelMargin * scale);
}
function render() {
handler=null;
$("#timeline").empty()
$('#label_elapsed').text(elapsed)
$('#label_launch').text( d3.time.format('%d %b %Y %H:%M')(new Date(beginningMillis)) )
var width = $(window).width();
var chart = d3.timeline()
.stack() // toggles graph stacking
.margin({left:getLabelMargin(0.85), right:100, top:0, bottom:0})
.tickFormat( getTickFormat() )
.rowSeperators('#f5f5f5')
.showTimeAxisTick()
;
var svg = d3.select("#timeline").append("svg").attr("width", width).datum(data).call(chart);
}
function hrz() {
if( handler != null ) clearTimeout(handler)
handler = setTimeout(render, 150);
}
$(document).ready(render)
$(window).resize(hrz); // resize the applet on window resize
</script>
</head>
<body>
<div>
<h3>Processes execution timeline</h3>
<p>
Launch time: <span id='label_launch'> </span><br>
Elapsed time: <span id='label_elapsed'> </span><br>
Legend: job wall time / memory usage (RAM) <span id='label_legend'> </span>
</p>
<div id="timeline"></div>
</div>
<div id='footer'>
Created with Nextflow -- <a href='http://www.nextflow.io' target='_blank'>http://nextflow.io</a>
</div>
<script type="text/javascript">
var prot = (("https:" == document.location.protocol) ? "https://" : "http://");
document.write(unescape("%3Clink href='" + prot + "fonts.googleapis.com/css?family=Lato' rel='stylesheet' type='text/css' %3E%3C/link%3E"));
</script>
</body>
</html>
pipeline_report/execution_trace.txt deleted 100644 → 0
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task_id hash native_id name status exit submit duration realtime %cpu peak_rss peak_vmem rchar wchar
pipeline_report/execution_trace.txt.1 deleted 100644 → 0
+ 0
− 1
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task_id hash native_id name status exit submit duration realtime %cpu peak_rss peak_vmem rchar wchar
pipeline_report/execution_trace.txt.2 deleted 100644 → 0
+ 0
− 1
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task_id hash native_id name status exit submit duration realtime %cpu peak_rss peak_vmem rchar wchar
pipeline_report/execution_trace.txt.3 deleted 100644 → 0
+ 0
− 1
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task_id hash native_id name status exit submit duration realtime %cpu peak_rss peak_vmem rchar wchar
pipeline_report/execution_trace.txt.4 deleted 100644 → 0
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− 1
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task_id hash native_id name status exit submit duration realtime %cpu peak_rss peak_vmem rchar wchar
pipeline_report/pipeline_dag.dot deleted 100644 → 0
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digraph "pipeline_dag" {
p0 [shape=point,label="",fixedsize=true,width=0.1,xlabel="Channel.fromPath"];
p1 [shape=circle,label="",fixedsize=true,width=0.1,xlabel="ifEmpty"];
p0 -> p1;
p1 [shape=circle,label="",fixedsize=true,width=0.1,xlabel="ifEmpty"];
p2 [label="bactos:prokka"];
p1 -> p2 [label="assembly"];
p2 [label="bactos:prokka"];
p3 [shape=point];
p2 -> p3;
}
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