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software_packages.config 825 B
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process {

    withName: 'agat' {
        conda = { singularity.enabled || docker.enabled ? '' : "$baseDir/conda/process_fastp.yml" }
        container = 'docker://quay.io/biocontainers/agat:1.0.0--pl5321hdfd78af_0'
    }

   withName: bakta {
     conda = { singularity.enabled || docker.enabled ? '' : "$baseDir/conda/process_bakta.yml" }
     container = 'docker://oschwengers/bakta:v1.6.0'
    }

    withLabel: busco {
      conda = { singularity.enabled || docker.enabled ? '' : "$baseDir/conda/process_busco.yml" }
      container = 'docker://quay.io/biocontainers/busco:5.3.2--pyhdfd78af_0'
    }

    withName: 'prokka' {
        conda = { singularity.enabled || docker.enabled ? '' : "$baseDir/conda/process_prokka.yml" }
        container = 'docker://quay.io/biocontainers/prokka:1.14.6--pl5321hdfd78af_4'
    }
}