Introduction.md

@@ -69,7 +69,7 @@ git config --global user.email "robert@legos.obs-mip.fr"
 
 ######  Connexion https (if you are working under proxy)
 
-add this (due to legos proxy):
+add this (due to Legos proxy):
 ```console
 git config --global http.https://git.outils-is.ird.fr.proxy http://proxy.legos.obs­-mip.fr:3128
 ```
@@ -96,7 +96,7 @@ If you are not friendly with the repos, the user can proceed in this way to sear
     * Help to retrieve the official ocean model repository + config. Legos: it give associated revision number and/or tag 
     * Help to retrieve auxiliary models (XIOS/OASIS/WRF ...)
     * Which pre-processing tools are associated with configuration?
-    * Module to be loaded on computer, where are the input data (large file)?
+    * Module to be loaded on computer, input data information ?
 
 
 
@@ -125,6 +125,7 @@ If you are not friendly with the repos, the user can proceed in this way to sear
 
 *OCEAN*
 
+  MERCATOR GLORYS (GLobal Ocean ReanalYsis and Simulation) reanalysis are based on the PSY4 system which is a global high resolution ocean monitoring and forecasting system from Mercator.
 
 * MERCATOR GLORYS2V4 
 
@@ -139,7 +140,7 @@ If you are not friendly with the repos, the user can proceed in this way to sear
   * Passive tracers T,S / Current U, V / SSH
 
 
-> **Note** : CMEMS is the Copernicus Marine Environment Monitoring Service , provide regular data from Mercator native data 
+> **Note** : CMEMS is the Copernicus Marine Environment Monitoring Service , which provide regular data from Mercator native data 
 
 
 *ATMO*
@@ -164,7 +165,7 @@ If you are not friendly with the repos, the user can proceed in this way to sear
 *_The Making Of the DRAKKAR FORCING SET DFS5 from (https://www.drakkar-ocean.eu/publications/reports/report_DFS5v3_April2016.pdf)_
 
 
-> **Note** : CDS is the Climate data store , provide regular data from ECMWF native data
+> **Note** : CDS is the Climate Data Store , provide regular data from ECMWF native data
 
 
 
@@ -176,6 +177,17 @@ If you are not friendly with the repos, the user can proceed in this way to sear
 
 
 
+*BATHY*
+
+* Global Bathymetry from ETOPO1, ETOPO2
+* Global Bathymetry from GEBCO 2019
+* Global Bathymetry From T-UGOm + postprocessing from F.Lyard (ref??)
+
+
+Is one of the first step of the preprocessing of a Nemo configuration. The interpolation onto the model grid has been conducted by taking all the original grid points falling into an NEMO grid box, and taking the median of those points.It s possible to choose the mean operator also. This procedure produces a smoothing of the sub-grid scale topography.
+
+
+
 <a name="introduction-contents-repository-description"></a>
 ========================
 
@@ -204,9 +216,14 @@ All these files are versioned for a configuration given here _CONFIG_CASE_:
 
  
  *     NEMO_CONFIGS/setup/CONFIG_CASE/conf/includefile.ini
+                                           modulefiles.tcl
+                                           arch.env
                                       scripts/run_nemo_tpl.ksh
                                               save_nemo_tpl.ksh
                                               modif_bathy.py
+                                      debug/ocean.output
+                                            debug_lib_oce.txt
+                                            debug_lib_iom.txt
 
 
 User can use preprocessing tools available in the NEMO_TOOLS/ project.