Explore projects

A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)

A QGIS plugin to use deep learning features to create maps without needing a GPU or large datasets. iamap.readthedocs.io/en/latest/

GraTools is a powerful tool for analyzing and handling pangenome graphs quickly, whatever the model' and therefore the size and the complexity of the GFA file. It allows users to extract sequences or subgraphs, convert graphs into FASTA sequences, and identify shared and specific nodes across samples. Additionally, it provides essential statistics for chromosomes and samples data. With multi-threading support and flexible logging capabilities, Gratools is an efficient solution for pangenome graph analysis.

SLURM Lightweight Automated Manager

LiDAR data voxelisation package

Shiny app is an interactive Exploratory Data Analysis (EDA) tool

Link: https://viznshine.ob7.ird.fr

Extension pour le système de production de document Quarto

Inference of significant kmers under selection

Genomic populations course at I-Trop IRD https://itrop.pages.ird.fr/training/training_genomique_pops

Image analysis of microscope spore with YOLO