Upload Singularity definition file

sen2chain_sen2cor2.5.5_20210701.def

+Bootstrap: docker
+From: ubuntu:18.04
+
+
+
+%environment
+	export LC_ALL=C
+	export LC_NUMERIC=C
+	export PYTHONPATH=$PYTHONPATH:/sen2chain:/sen2chain/sen2chain/:/usr/local/share/python3.6/dist-package
+	export PATH=$PATH:/sen2chain:/sen2chain/sen2chain/:/usr/local/share/python3.6/dist-package:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/Sen2Cor-02.05.05-Linux64/L2A_Bashrc
+    export HOME=/sen2chain_home
+    export SEN2COR_HOME=/sen2cor_home
+
+
+
+
+%post
+	apt-get update
+	apt install --assume-yes curl
+    apt install --assume-yes python3 && apt install --assume-yes python3-pip
+    apt install --assume-yes git
+    apt install --assume-yes wget
+    add-apt-repository ppa:ubuntugis/ppa &&  apt-get update
+    apt-get --assume-yes install gdal-bin libgdal-dev
+
+    export CPLUS_INCLUDE_PATH=/usr/include/gdal
+    export C_INCLUDE_PATH=/usr/include/gdal
+    pip3 install -Iv setuptools==41.0.0
+    pip3 install GDAL==$(gdal-config --version | awk -F'[.]' '{print $1"."$2}')
+
+    mkdir /sen2chain_home
+    chmod -R a+rw /sen2chain_home
+
+    cd /
+    wget http://step.esa.int/thirdparties/sen2cor/2.5.5/Sen2Cor-02.05.05-Linux64.run
+    chmod +x Sen2Cor-02.05.05-Linux64.run
+    ./Sen2Cor-02.05.05-Linux64.run
+    chmod -R a+rwx /Sen2Cor-02.05.05-Linux64
+    mkdir -p /sen2cor_home/sen2cor/2.5/cfg
+    cp /Sen2Cor-02.05.05-Linux64/lib/python2.7/site-packages/sen2cor/cfg/L2A_GIPP.xml /sen2cor_home/sen2cor/2.5/cfg/L2A_GIPP.xml
+    chmod -R a+rwx /sen2cor_home
+
+    git clone https://framagit.org/espace-dev/sen2chain.git
+    cd sen2chain
+    pip3 install Cython
+    pip3 install PROJ>=7.2.0
+    pip3 install pyproj==2.6.1 #1.9.6
+    pip3 install -r requirements.txt
+    chmod -R a+wrx /sen2chain
+
+%runscript
+    #import sen2chain to create config.cfg
+    (echo "try:" ; echo "   import sen2chain" ; echo "except ValueError:" ; echo "    print('Python ok')") | python3
+
+    #replace api's id
+    echo "cyprien.alexandre@ird.fr Ev3pP21$" > '/sen2chain_home/sen2chain_data/config/peps.txt'
+    sed -i 's/peps_.*/peps_config_path\ =\ \/sen2chain_home\/sen2chain_data\/config\/peps.txt/' /sen2chain_home/sen2chain_data/config/config.cfg
+
+    sed -i 's/scihub_i.*/scihub_id\ =\ telsig/' /sen2chain_home/sen2chain_data/config/config.cfg
+    sed -i 's/scihub_p.*/scihub_pwd\ =\ CV5f3*kz/' /sen2chain_home/sen2chain_data/config/config.cfg
+
+    #Change SEN2COR_HOME variable and L2A_bashrc
+    sed -i 's/sen2cor_.*/sen2cor_bashrc_path\ =\ \/Sen2Cor-02\.05\.05-Linux64\/L2A_Bashrc/' /sen2chain_home/sen2chain_data/config/config.cfg
+    sed -i 's/SEN2COR_H.*/SEN2COR_HOME\=\/sen2cor_home\/sen2cor\/2.5/' /Sen2Cor-02.05.05-Linux64/L2A_Bashrc
+
+    bash
+
+