re-correct output file names

noisyplotype.py

@@ -209,7 +209,7 @@ def generate_individuals (nb_individuals, chromosome_size, marker_density, mean_
     #markers_positions = sorted(random.sample(range(chromosome_size),size))
     markers_positions = np.linspace(1, chromosome_size, markers_nb, dtype="int")
 
-    with open('Breakpoints_3x.csv', 'w') as breakpointFile:
+    with open('Breakpoints.csv', 'w') as breakpointFile:
         breakpointFile.write(",".join(["sample","average_bkp_position", "bkp_start_position", "bkp_stop_position", "transitionType"]) + "\n");
         for i in range(nb_individuals):
             print("individual " + str(i+1))
@@ -276,7 +276,7 @@ header = [
 
 
 ## Write the VCF files (with and without errors)
-with open('test_3x.vcf', 'w') as file:
+with open('test.vcf', 'w') as file:
     # Write the header of the file
     file.writelines(header)
     
@@ -292,7 +292,7 @@ with open('test_3x.vcf', 'w') as file:
         row.append("1/1:"+ str(round(mean_depth)) + ":0," + str(round(mean_depth)) + ":.:.:.:.")
         file.write("\t".join(row) + "\n");
 
-with open('test_error_3x.vcf', 'w') as file:
+with open('test_error.vcf', 'w') as file:
     # Write the header of the file
     file.writelines(header)