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# PopSimul
## Description
## Requirements
python 3
## Running popsimul
``` python popsimul.py -o test1511.vcf -ni 10 -s 44000000 -cM 180 -nm 220000 -a 3 -m 10 -eA 0.03 -eB 0.05```
### Parameters description
You can see all parameters by running this command
``` python popsimul.py -h```
| Short | Long | Description | Default value |
|---|---|---|---|
| -o | --output | Name for the 3 generated files : [output].vcf, [output]_errors.vcf, [output]_Breakpoints.csv | popsimul |
| -ni | --nb_individuals | number of individuals | 10 |
| -bp | --chr_bp | chromosome size | 44000000|
| -cM | --cM_size | size of genetic map | 180 |
| -nm | --nb_markers | number of markers| 220000 |
| -a | --average_depth | average depth | 3 |
| -m | --max_depth | max depth | 10 |
| -eA | --error_rate_A | error rate for A | 0.05 |
| -eB | --error_rate_B | error rate for B | 0.05 |