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Commit fea59790 authored by christine.tranchant_ird.fr's avatar christine.tranchant_ird.fr
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add vim

parent d01e5257
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1 merge request!1Draft: Resolve "Vecscreen"
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frangiPANe/containers/frangiPANe.def
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...@@ -12,7 +12,8 @@ description="Conda dependances of frangiPANe" ...@@ -12,7 +12,8 @@ description="Conda dependances of frangiPANe"
website=... website=...
%environment %environment
export PATH="/usr/local/lib/python3.10/dist-packages:/usr/local/miniconda/miniconda3/bin:/usr/bin:$PATH" export PATH="/usr/local/miniconda/miniconda3/bin:/usr/bin:$PATH"
export PYTHONPATH="/usr/local/lib/python3.10/dist-packages:$PYTHONPATH"
# Post-installation section # Post-installation section
%post %post
...@@ -24,6 +25,7 @@ echo "\n debconf debconf/frontend select Noninteractive\n" | debconf-set-selecti ...@@ -24,6 +25,7 @@ echo "\n debconf debconf/frontend select Noninteractive\n" | debconf-set-selecti
echo "\n ###### wget...\n" echo "\n ###### wget...\n"
apt-get install -y wget python3 python3-pip apt-get install -y wget python3 python3-pip
apt-get install -y vim
python3 -m pip install -U pip setuptools build numba python3 -m pip install -U pip setuptools build numba
python3 -m pip install ipython panel biopython pysam pandas matplotlib seaborn python3 -m pip install ipython panel biopython pysam pandas matplotlib seaborn
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