load module through python code

eefa1c1a · christine.tranchant_ird.fr · 699ebd0d · eefa1c1a
Commit eefa1c1a authored 1 year ago by christine.tranchant_ird.fr
--- a/frangiPANe/snakefiles/vecscreen.smk
+++ b/frangiPANe/snakefiles/vecscreen.smk
@@ -30,7 +30,7 @@ rule vecscreen:
        from Bio import SeqIO

        # Load NCBI-TOOLS module
-        subprocess.run(['module', 'load', params.module)
+        subprocess.run(['module', 'load',params.module])

        nb_seq, nb_seq_no_hits, nb_seq_suspicious = 0, 0, 0