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Commit ed2694ea authored by christine.tranchant_ird.fr's avatar christine.tranchant_ird.fr
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fix bug

parent 8e0247d1
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1 merge request!1Draft: Resolve "Vecscreen"
#!/usr/bin/env python3
#!/usr/bin/python3
from Bio import SeqIO
from os import path
nb_seq, nb_seq_no_hits, nb_seq_suspicious = 0, 0, 0
with open(os.path.join(output.fasta_file), "w") as o:
with open(os.path.join(snakemake.output.fasta_file), "w") as o:
for seq in SeqIO.parse(snakemake.input.fasta_file, "fasta"):
# Vecscreen only works with fasta file, not sequence
......
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