debugg install frangiPANe with update snakemake version

frangiPANe/__init__.py

@@ -4,14 +4,13 @@
 from frangiPANe import generate_stats as gs
 from .module import FrangiPANe
 from pathlib import Path
-from .global_variables import GIT_URL, DOCS, DATATEST_URL_FILES, SINGULARITY_URL_FILES
+from .global_variables import GIT_URL, DOCS, DATATEST_URL_FILES, APPTAINER_URL_FILES
 from ._version import version as __version__
 from ._version import version_tuple
 
 #TODO SEB : LOGO https://forge.ird.fr/diade/frangipane/-/blob/main/docs/source/_images/frangiPANe.png?ref_type=heads
 logo = Path(__file__).parent.resolve().joinpath('frangiPANe.png').as_posix()
 
-__version__ = Path(__file__).parent.resolve().joinpath("VERSION").open("r").readline().strip()
 
 __doc__ = """frangiPANe was developed as a modular and interactive application to simplify the construction of a panreference 
 using the map-then-assembly approach. It consists in a Jupyter Notebook application that centralizes code,documentation and interactive visualizations together"""
@@ -52,8 +51,9 @@ dico_tool = {
     "url": GIT_URL,
     "docs": DOCS,
     "description_tool": description_tools,
-    "singularity_url_files": SINGULARITY_URL_FILES,
+    "apptainer_url_files": APPTAINER_URL_FILES,
     "datatest_url_files": DATATEST_URL_FILES,
     "snakefile": Path(__file__).resolve().parent.joinpath("snakefiles", "Snakefile"),
-    "snakemake_scripts": Path(__file__).resolve().parent.joinpath("snakemake_scripts")
+    "snakemake_scripts": Path(__file__).resolve().parent.joinpath("snakemake_scripts"),
+    "git_configfile_path": Path(__file__).resolve().parent.joinpath("install_files","configfile.yml")
 }

frangiPANe/global_variables.py

@@ -3,7 +3,7 @@ from pathlib import Path
 DOCS = "https://frangiPANe.readthedocs.io/en/latest/"
 GIT_URL = "https://forge.ird.fr/diade/frangipane"
 
-SINGULARITY_URL_FILES = [('https://itrop.ird.fr/frangiPANe/',
+APPTAINER_URL_FILES = [('https://itrop.ird.fr/frangiPANe/',
                           f'INSTALL_PATH/containers/frangiPANe.sif')
                          ]