Skip to content
Snippets Groups Projects
Commit 81c55402 authored by christine.tranchant_ird.fr's avatar christine.tranchant_ird.fr
Browse files

Vecreen command related to previous version

parent b7deef44
No related branches found
No related tags found
1 merge request!1Draft: Resolve "Vecscreen"
......@@ -33,7 +33,7 @@ with open(os.path.join(output_fasta), "w") as o:
tmp.write('>' + str(seq.description) + '\n')
tmp.write(format_60(str(seq.seq)) + '\n')
cmd = f'vecscreen -d {snakemake.input.univec_file} -i {tmp_file} -f 3'
cmd = f'vecscreen -d {input_univec} -i {tmp_file} -f 3'
print(f"\t\t\ {seq.description} : vecscreen cmd : {cmd}")
try:
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment