modify vecsceen rule

frangiPANe/snakefiles/vecscreen.smk

@@ -30,7 +30,7 @@ rule vecscreen:
         from Bio import SeqIO
 
         # Load NCBI-TOOLS module
-        cmd_load=f"module load {params.module}"
+        #cmd_load=f"module load {params.module}"
 
         nb_seq, nb_seq_no_hits, nb_seq_suspicious = 0, 0, 0
 
@@ -43,8 +43,9 @@ rule vecscreen:
                     tmp.write('>' + str(seq.description) + '\n')
                     tmp.write(gs.format_60(str(seq.seq)) + '\n')
 
-                cmd = f'module load {params.module} && vecscreen -db {input.univec_file} -query {tmp_file} -outfmt 1 -text_output'
-                print(f"\t\t\ {seq.description} : vecscreen cmd : {cmd}")
+                cmd = f'vecscreen -db {input.univec_file} -query {tmp_file} -outfmt 1 -text_output'
+                #cmd = f'module load {params.module} && vecscreen -db {input.univec_file} -query {tmp_file} -outfmt 1 -text_output'
+                #print(f"\t\t\ {seq.description} : vecscreen cmd : {cmd}")
 
                 try:
                     subprocess.run(cmd, shell=True, check=True)