rename config file yaml

frangiPANe/install_files/config.yaml

-######### frangiPANe CONFIGURATION
-
-### DATA
-PROJECT:
-  Name: "RICE-TEST"
-  outDir: "DATA_DIR/OUTPUT/"
-  sampleDir: "DATA_DIR/data_test/fastq"
-  groupFile: "DATA_DIR/data_test/rice_group.txt"
-  refFile: "DATA_DIR/data_test/ref.fasta"
-  univecFile: "DATA_DIR/data_test/bank/UniVec_Core"
-
-
-######### PARAMS
-
-### ANCHORING
-CONTIGS:
-  minLength: 300
-  anchoring_depth: 15
-
-### SOFT
-PARAMS:
-  bwa_index: "-a is"
-  bwa_mem: "-M"
-  samtools_view: "-F 0x2"
-  samtools_sort: ""
-  abyss: "k=64"
-  assembly_stats: "-t"
-  assembly_stats2: "-s"
-  cd_hit: "-c 0.8 -s 0.95"
-
-######### RULES ACTIVATED
-MAPPING_REF:
-  ALL: True
-
-ASSEMBLY:
-  ALL: True
-
-BUILD_PANREF:
-  ALL: True
-
-REPORT:
-  ALL: True
-#length minimum