Updating manual

README.rst

@@ -11,7 +11,7 @@ I - Installing FrangiPANe
 =======================
 
 Requirement
-^^^^^^^^^^^
+"""""""""""""""""
 - `Git <https://git-scm.com/>`_
 
 - `Singularity <https://...>`_
@@ -25,7 +25,8 @@ Clone the git repository
    git clone https://forge.ird.fr/diade/frangipane.git
 
 Install the frangiPANe python package
--------------------
+"""""""""""""""""
+
 ::
 
     cd PATH_2_FRANGIPANE_DIRECTORY
@@ -39,7 +40,8 @@ Install the frangiPANe python package
 
         python3 -m pip install snakecdysis@git+https://forge.ird.fr/phim/sravel/snakecdysis.git@main
 
-**Install frangiPANe tool**
+Install frangiPANe tool
+"""""""""""""""""
 
 Choose only one mode
 
@@ -55,15 +57,15 @@ Choose only one mode
 
     frangiPANe install_local
 
-**add the prompt complementation**
-
+Add the prompt complementation
+"""""""""""""""""
 ::
 
     sh path2frangipane_directory/frangiPANe/frangiPANe-complete.sh
 
 
 Download or build the singularity container in the container directory
-~~~~~~~~~~~
+"""""""""""""""""
 
 ::
 
@@ -72,8 +74,8 @@ Download or build the singularity container in the container directory
     # OR build the container
     singularity build frangiPANe.sif frangiPANe.def
 
-**Checking if frangiPANe has been correctly installed**
-
+Checking if frangiPANe has been correctly installed
+"""""""""""""""""
 
 ::