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Commit 467bb5d6 authored by christine.tranchant_ird.fr's avatar christine.tranchant_ird.fr
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integrating fastq stats

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frangiPANe/snakefiles/generate_jupyter_book.smk
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......@@ -3,7 +3,7 @@ rule generate_jupyter_book:
jb_file=f"{ frangipane_obj.install_path }/report/frangiPANe_report.ipynb",
ref_png=f"{frangipane_obj.path_stat_plot}/00_ref.png",
ref_csv = f"{frangipane_obj.path_stat_sum}/00_ref.txt",
fastq_csv= rules.merge_fastq_stats.stat_file
fastq_csv= rules.merge_fastq_stats.output.stat_file
output:
jb_file=f"{ frangipane_obj.path_output }/report/frangiPANe_stats.ipynb"
params:
......
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