@@ -80,7 +80,13 @@ Download or build the singularity container in the container directory
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@@ -80,7 +80,13 @@ Download or build the singularity container in the container directory
Checking if frangiPANe has been correctly installed
Checking if frangiPANe has been correctly installed
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* Run the `frangiPANe` command, the following lines have to print if all i alright :
* You can run the following command :
::
frangiPANe command
If everything is okay, the following lines should be printed.
::
::
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@@ -135,7 +141,13 @@ Checking if frangiPANe has been correctly installed
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@@ -135,7 +141,13 @@ Checking if frangiPANe has been correctly installed
test_install Test frangiPANe cluster mode with "data_test"
test_install Test frangiPANe cluster mode with "data_test"
* Run the command `frangiPANe edit_tools` to check the path of the container and modify the name of modules to load if necessary (cluster mode):
* To check the path of the container and modify the name of modules if necessary in cluster mode, run the following command:
::
frangiPANe edit_tools
This command should display information about the container path and allow you to make modifications to the module names if needed.
::
::
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@@ -220,7 +232,13 @@ III - Run FrangiPANe
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@@ -220,7 +232,13 @@ III - Run FrangiPANe
**cluster mode**
**cluster mode**
* Configure slurm jobs with the command `frangiPANe edit_cluster_config`
* To configure Slurm jobs, you can run the following command :
::
frangiPANe edit_cluster_config
This command is likely to open a configuration file in a text editor, allowing you to specify the necessary parameters for configuring Slurm jobs. Make the required modifications, save the file, and exit the text editor.
::
::
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@@ -249,7 +267,7 @@ III - Run FrangiPANe
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@@ -249,7 +267,7 @@ III - Run FrangiPANe
23
23
24 #create_panref
24 #create_panref
* Launch your first analysis with frangiPANe. Start with data-test !
* To launch your first analysis with frangiPANe using the data-test dataset :