Updating description

README.rst

@@ -3,32 +3,6 @@ simplify the construction of a panreference using the map-then-assembly
 approach. It consists in a Jupyter Notebook application that centralizes
 code,documentation and interactive visualizations together
 
-### Requirements
-
--  Docker : https://docs.docker.com/get-docker/
-
--  Python3 (v3.9.7) : https://www.python.org/
-
--  biopython : https://biopython.org/
-
--  panel : https://panel.holoviz.org/
-
--  abyss : https://github.com/bcgsc/abyss/blob/master/README.md
-
--  bwa (v. 0.7.17) : https://github.com/lh3/bwa/blob/master/README.md
-
--  ea-utils (fastq-stats, v 1.01) :
-   https://expressionanalysis.github.io/ea-utils/
-
--  samtools (v1.10) : http://www.htslib.org/
-
--  assembly-stats : https://github.com/sanger-pathogens/assembly-stats
-
--  cd-hit : https://github.com/weizhongli/cdhit/blob/master/README
-
--  mnimap2
-
--  girafe
 
 How to use FrangiPANe ?
 =======================
@@ -54,6 +28,14 @@ Run FrangiPANe
    wget https://itrop.ird.fr/frangiPANe/data_test.tar.gz
    tar zxvf data_test.tar.gz
 
+Previous version
+
+For version 2.0:
+Sebastien Ravel and Christine Tranchant-Dubreuil (2024).
+
+For version 0.1:
+Christine Tranchant-Dubreuil and al. (2023). FrangiPANe, a tool for creating a panreference using left behind reads. NAR Genom Bioinform. doi: 10.1093/nargab/lqad013.
+
 Licence
 =======
 

frangiPANe/__init__.py

@@ -15,6 +15,8 @@ __doc__ = """frangiPANe was developed as a modular and interactive application t
 using the map-then-assembly approach. It consists in a Jupyter Notebook application that centralizes code,documentation and interactive visualizations together"""
 
 description_tools = f"""
+                                    
+                                    
                                                                                                                         
    ad88                                                    88  88888888ba      db         888b      88              
   d8'                                                      ''  88      "8b    d88b        8888b     88              
@@ -31,13 +33,14 @@ A modular and interactive application to simplify  the construction of a panrefe
 
     Version {__version__}
     
-    @author: Sebastien Ravel (CIRAD) and Christine Tranchant (IRD)
+    @author: Sebastien Ravel and Christine Tranchant
     @email: christine.tranchant@ird.fr
 
     Please cite our github: GIT_URL
     
     Licencied under CeCill-C (http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.html)
-    and GPLv3 Intellectual property belongs to IRD and authors.
+    and GPLv3 Intellectual property belongs to IRD, CIRAD and authors.
+    
     Documentation avail at: DOCS
 
 """