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Commit 1140a984 authored by christine.tranchant_ird.fr's avatar christine.tranchant_ird.fr
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Adding python package installation

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frangiPANe/containers/frangiPANe.def
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...@@ -94,7 +94,8 @@ apt-get install -y abyss cd-hit ...@@ -94,7 +94,8 @@ apt-get install -y abyss cd-hit
echo "\n\n ###### ncbi-blast+ ncbi-tools-bin...\n" echo "\n\n ###### ncbi-blast+ ncbi-tools-bin...\n"
apt-get install -y ncbi-blast+ ncbi-tools-bin apt-get install -y ncbi-blast+ ncbi-tools-bin
python3 -m pip install -U pip setuptools build numba --yes
python3 -m pip install ipython panel biopython pysam pandas matplotlib seaborn
# Create a directory for Miniconda, download and install Miniconda # Create a directory for Miniconda, download and install Miniconda
echo "\n\n ########### Setting up Miniconda...\n" echo "\n\n ########### Setting up Miniconda...\n"
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