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#Build system backend to create package to upload on pypi
[build-system]
build-backend = "setuptools.build_meta"
requires = [
"setuptools>=68.2.0",
"setuptools_scm[toml]>=8.0.0",
"build>=1.0.0"
]
# configuration of setuptools_scm to use tag version autoincrementation
# used last TAG version dernier
[tool.setuptools_scm]
write_to = "frangiPANe/_version.py" #TODO: SEB 17/11 => creer automatiquement mais à ajouter dans .gitignore
version_scheme = "release-branch-semver"
tag_regex = "^(\\d.\\d.\\d)-*\\w*\\d*$"
local_scheme = "no-local-version"
# define Project settings
[project]
name = "frangiPANe" #"culebrONT"
dynamic = ["version"]
description = """blablabla"""
authors = [
{ name = "Tranchant-Dubreuil Christine (IRD)", email = "christine.tranchant@ird.fr" },
]
maintainers = [
{ name = "Tranchant-Dubreuil Christine (IRD)", email = "christine.tranchant@ird.fr" },
]
dependencies = ["pandas", #TODO: SEB 17/11 => actualiser avec packages python / rules etc.
"matplotlib",
"tabulate",
"ipython",
"biopython",
"pysam",
"numpy",
"snakecdysis>=0.1.0",
"setuptools>=68.2.0",
"nbformat"
]
requires-python = ">=3.8"
readme = "README.rst"
license = { file = "LICENCE" }
keywords = ["snakemake", "pangenomics", "workflow", "HPC"]
classifiers = [ #TODO
'License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)',
'License :: CeCILL-C Free Software License Agreement (CECILL-C)',
'License :: Free for non-commercial use',
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Developers',
'Intended Audience :: End Users/Desktop',
'Operating System :: POSIX :: Linux',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: R',
'Natural Language :: English',
'Topic :: Scientific/Engineering',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Software Development :: Assemblers'
]
Homepage = "https://forge.ird.fr/diade/culebront_pipeline"
Downloads = "https://forge.ird.fr/diade/culebront_pipeline/archive/"
"Bug Tracker" = "https://forge.ird.fr/diade/culebront_pipeline/issues"
Documentation = "https://snakecdysis.readthedocs.io/en/latest/"
"Source Code" = "https://forge.ird.fr/diade/culebront_pipeline"
[project.optional-dependencies]
dev = [
"sphinx_click",
"sphinx_copybutton",
"sphinx_rtd_theme",
"tox",
]
# setup scripts links
[project.scripts]
[project.entry-points.frangiPANe]
frangiPANe = "__init__"
# Try to link sphinx to file
[tool.sphinx]
source-dir = "docs/source"
build-dir = "docs/build"
config-dir = "docs/source"