Commits · 186597449dee2e250cd0126bf9c70647b818c91d · DIADE / dynadiv / GrAnnoT · GitLab

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Sep 11, 2024
- Replace LICENSE for GNU GPLv3 · 18659744
  francois.sabot_ird.fr authored 6 months ago
  
  18659744
Sep 04, 2024
- debug haplotype output. it used to output the haplotype transfer for each walk (chr/ctg). · 0571bedb
  nina.marthe_ird.fr authored 6 months ago
  
  0571bedb
Sep 02, 2024
- modified how the feature ids are used to handle features fragmented on several lines in the gff · 8d0291e1
  nina.marthe_ird.fr authored 6 months ago
  
  8d0291e1
Aug 29, 2024
- added a check that the sourge and target genome names are found in the walks/paths of the graph · 22c4a0b8
  nina.marthe_ird.fr authored 6 months ago
  
  22c4a0b8
- changed how Segments are stored while loading the intersect. now can handle... · a5d749c9
  nina.marthe_ird.fr authored 6 months ago
  
  changed how Segments are stored while loading the intersect. now can handle duplicate segments in the source genome (it used to cause negative positions in var output)
  a5d749c9
- added header to var output · 42277630
  nina.marthe_ird.fr authored 6 months ago
  
  42277630
- removed debug print · 225699a8
  nina.marthe_ird.fr authored 6 months ago
  
  225699a8
Aug 22, 2024
- commented debug print lines · b57b0bd3
  nina.marthe_ird.fr authored 6 months ago
  
  b57b0bd3
Aug 20, 2024
- fixed haplotype option, it didnt work when -sh was absent · 8efb565b
  nina.marthe_ird.fr authored 6 months ago
  
  8efb565b
- changed the id of the segments to remove the s · f5801f46
  nina.marthe_ird.fr authored 6 months ago
  
  f5801f46
Jul 23, 2024
- spell check · bea0851f
  nina.marthe_ird.fr authored 7 months ago
  
  bea0851f
- added error message when the intersect is empty · d22d78f2
  nina.marthe_ird.fr authored 7 months ago
  
  d22d78f2
- specified input data format · 31914a8b
  nina.marthe_ird.fr authored 7 months ago
  
  31914a8b
- add installation method · e4ea86d7
  nina.marthe_ird.fr authored 7 months ago
  
  e4ea86d7
- removed warning from bedtools · ca98591b
  nina.marthe_ird.fr authored 7 months ago
  
  ca98591b
Jul 12, 2024
- moved files · 276a9dfe
  nina.marthe_ird.fr authored 8 months ago
  
  276a9dfe
- moved files · 206658a7
  nina.marthe_ird.fr authored 8 months ago
  
  206658a7
- generated new dist files with the bug fix · 3ee05d10
  nina.marthe_ird.fr authored 8 months ago
  
  3ee05d10
- bug fix for the PAV matrix output · 1c32e083
  nina.marthe_ird.fr authored 8 months ago
  
  1.0.3
  
  1c32e083
- bug fix, grannot now accepts graphs where some chromosomes are split on several walks · 0192b108
  nina.marthe_ird.fr authored 8 months ago
  
  0192b108
- added tqdm in dependencies · 0c8652fc
  nina.marthe_ird.fr authored 8 months ago
  
  0c8652fc
Jun 13, 2024
- renammed dist files · 0730f91f
  nina.marthe_ird.fr authored 9 months ago
  
  0730f91f
- update package distribution files · dbf1ce79
  nina.marthe_ird.fr authored 9 months ago
  
  dbf1ce79
Jun 12, 2024
- organised arguments in groups; set conditions for some arguments · 277bc388
  nina.marthe_ird.fr authored 9 months ago
  
  1.0.2
  
  277bc388
- corrected requirements for option -pav · b8648abd
  nina.marthe_ird.fr authored 9 months ago
  
  b8648abd
- corrected the git/issues link and added the documentation adress · df22f72d
  nina.marthe_ird.fr authored 9 months ago
  
  df22f72d
- updated readme and added a doc file in md · 07284910
  nina.marthe_ird.fr authored 9 months ago
  
  07284910
- added installation files for the package · b3c12d0f
  nina.marthe_ird.fr authored 9 months ago
  
  b3c12d0f
- update version · f9e007d7
  nina.marthe_ird.fr authored 9 months ago
  
  1.0.1
  
  f9e007d7
Jun 06, 2024
- adding loops · cca80b85
  francois.sabot_ird.fr authored 9 months ago
  
  cca80b85
- Moving folder for building · 264e1641
  francois.sabot_ird.fr authored 9 months ago
  
  264e1641
Jun 03, 2024
- update readme · aa3ab536
  nina.marthe_ird.fr authored 9 months ago
  
  1.0.0
  
  aa3ab536
- Merge branch 'main' of forge.ird.fr:diade/dynadiv/grannot · 46a29d1e
  nina.marthe_ird.fr authored 9 months ago
  
  .
  46a29d1e
- added load bar to geature apth computing · 2a3107d0
  nina.marthe_ird.fr authored 9 months ago
  
  2a3107d0
- Merge branch 'main' of forge.ird.fr:diade/dynadiv/grannot · a4a3eb19
  francois.sabot_ird.fr authored 9 months ago
  
  a4a3eb19
- First add of code for liftoff benchmark · 5a9dc1b3
  francois.sabot_ird.fr authored 9 months ago
  
  5a9dc1b3
May 29, 2024
- small bug fix · c004d430
  nina.marthe_ird.fr authored 9 months ago
  
  c004d430
- update readme · a4c8e534
  nina.marthe_ird.fr authored 9 months ago
  
  a4c8e534
- corrected haplotype option requirement · 099e8916
  nina.marthe_ird.fr authored 9 months ago
  
  099e8916
- update readme · d81997ff
  nina.marthe_ird.fr authored 9 months ago
  
  d81997ff