Commits · 145d10f42c033b4b63045160e2e5e21f56ad5caa · DIADE / dynadiv / GrAnnoT

Nov 18, 2024
- split functions from Graph_gff in two files, load_intersect and graph_annot · 2ad13a73
  nina.marthe_ird.fr authored 4 months ago
  
  2ad13a73
Sep 02, 2024
- modified how the feature ids are used to handle features fragmented on several lines in the gff · 8d0291e1
  nina.marthe_ird.fr authored 6 months ago
  
  8d0291e1
Aug 29, 2024

changed how Segments are stored while loading the intersect. now can handle... · a5d749c9

nina.marthe_ird.fr authored 7 months ago

changed how Segments are stored while loading the intersect. now can handle duplicate segments in the source genome (it used to cause negative positions in var output)

a5d749c9

Aug 20, 2024
- changed the id of the segments to remove the s · f5801f46
  nina.marthe_ird.fr authored 7 months ago
  
  f5801f46
Jul 12, 2024
- bug fix, grannot now accepts graphs where some chromosomes are split on several walks · 0192b108
  nina.marthe_ird.fr authored 8 months ago
  
  0192b108
May 29, 2024
- small bug fix · c004d430
  nina.marthe_ird.fr authored 10 months ago
  
  c004d430
- added haplotype handling, and option to specify if there are haplotypes and... · 8506535b
  nina.marthe_ird.fr authored 10 months ago
  
  added haplotype handling, and option to specify if there are haplotypes and what haplotypeto use from the source genome
  8506535b
- removed 'maxdiff' option, redundant with cov and id · 376013b2
  nina.marthe_ird.fr authored 10 months ago
  
  376013b2
May 22, 2024
- changed how files are read · 48e345b6
  nina.marthe_ird.fr authored 10 months ago
  
  48e345b6
- added check before division to avoid div by 0 in coverage and id computing · f6844ac9
  nina.marthe_ird.fr authored 10 months ago
  
  f6844ac9
- package preparation · 6e2add3c
  nina.marthe_ird.fr authored 10 months ago
  
  6e2add3c
- moved files to prepare package · 9a06c9ec
  nina.marthe_ird.fr authored 10 months ago
  
  9a06c9ec