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Commit ffcffcfc authored by nina.marthe_ird.fr's avatar nina.marthe_ird.fr
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corrected the detection of variation in the start codon

parent 2dff4cf5
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...@@ -274,7 +274,7 @@ for cds_id in cds_var.keys(): ...@@ -274,7 +274,7 @@ for cds_id in cds_var.keys():
print("variation",index+1, ":") print("variation",index+1, ":")
if posVar[0]<=3: if posVar[0]<3:
print("variation of the start codon, mRNA most likely wont be translated") print("variation of the start codon, mRNA most likely wont be translated")
#findOtherStart(cds,segments_on_target_genome) # for now we don't look for another start codon #findOtherStart(cds,segments_on_target_genome) # for now we don't look for another start codon
break break
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