simplifié l'execution des tests

main.py

@@ -48,24 +48,24 @@ if run=="command_line":
 
 
 if run=="test":
-    intersect_path='/home/nina/annotpangenome/test_data/input_data_inf/intersect.bed'
+    intersect_path='intersect.bed'
     load_intersect(intersect_path)
 
     # outputs the gff of the graph for chr10
-    output_gff='test_data/graph.gff'
-    output_gaf='test_data/graph.gaf'
-    gfa="test_data/input_data_inf/graph_test.gfa"
+    output_gff='graph.gff'
+    output_gaf='graph.gaf'
+    gfa="graph.gfa"
     graph_gff(output_gff)
     graph_gaf(output_gaf,gfa)
 
-    out_once="test_data/target_genome.gff"
-    out_var="test_data/variations.txt"
-    out_detail="test_data/target_genome_detail.gff"
-    pos_seg="test_data/input_data_inf/genome4_chr10.bed"
+    out_once="target_genome.gff"
+    out_var="variations.txt"
+    out_detail="target_genome_detail.gff"
+    pos_seg="genome2_chr10.bed"
 
-    gff="test_data/graph.gff"
+    gff=output_gff
 
-    target_genome_name="genome4_chr10"
+    target_genome_name="genome2_chr10"
 
     # outputs the gff of a genome for the chr10
     genome_gff(pos_seg,gff,gfa,out_once,out_detail,out_var,target_genome_name)
@@ -97,7 +97,7 @@ if run=="reel":
         out_detail="nb_chr10_all_detail.gff"
         out_var="variations_chr10.gff"
 
-    gff="graph_chr10.gff"
+    gff=output_gff
     target_genome_name="CM020642.1_Azucena_chromosome10"
 
     # outputs the gff of a genome for the chr10