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Commit fc2f9633 authored by nina.marthe_ird.fr's avatar nina.marthe_ird.fr
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changé la définition des données d'entrées, moins de ligne à modifier quand on...

changé la définition des données d'entrées, moins de ligne à modifier quand on change de génome cible
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from Graph_gff import Features,load_intersect from Graph_gff import Features,load_intersect
from Functions import get_segment_sequence,convert_strand from Functions import get_segment_sequence,convert_strand
target_genome_name="genome5_chr10" target_genome_name="genome2_chr10"
pos_seg=target_genome_name+".bed"
var_file=target_genome_name+"_variations.txt"
intersect_path='intersect.bed' intersect_path='intersect.bed'
load_intersect(intersect_path) load_intersect(intersect_path)
pos_seg="genome5_chr10.bed"
var=open("genome5_chr10_variations.txt",'r') var=open(var_file,'r')
gfa="graph.gfa" gfa="graph.gfa"
def get_segments_sequence_and_paths(gfa): def get_segments_sequence_and_paths(gfa):
......
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