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Commit ca98591b authored by nina.marthe_ird.fr's avatar nina.marthe_ird.fr
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removed warning from bedtools

parent 276a9dfe
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...@@ -171,8 +171,7 @@ def run_intersect(args,seg_coord_path): ...@@ -171,8 +171,7 @@ def run_intersect(args,seg_coord_path):
for file in files: for file in files:
if args.verbose: if args.verbose:
print(f' Building the intersection for the path {file.stem}') print(f' Building the intersection for the path {file.stem}')
command=f"bedtools intersect -wo -a {file.as_posix()} -b {args.gff.as_posix()}>>{intersect_path}" command=f"bedtools intersect -nonamecheck -wo -a {file.as_posix()} -b {args.gff.as_posix()}>>{intersect_path}"
subprocess.run(command,shell=True,timeout=None) subprocess.run(command,shell=True,timeout=None)
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