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DIADE
dynadiv
GrAnnoT
Commits
c3d58e92
Commit
c3d58e92
authored
1 year ago
by
nina.marthe_ird.fr
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ajout d'une fct pour transcrire les séquences d'adn
parent
fe97d997
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1 changed file
Functions.py
+16
-2
16 additions, 2 deletions
Functions.py
with
16 additions
and
2 deletions
Functions.py
+
16
−
2
View file @
c3d58e92
...
@@ -497,13 +497,27 @@ def add_feature_sequence(feature,seg_seq):
...
@@ -497,13 +497,27 @@ def add_feature_sequence(feature,seg_seq):
feature_sequence
=
""
feature_sequence
=
""
for
segment
in
feature
.
segments_list
:
for
segment
in
feature
.
segments_list
:
if
segment
==
feature
.
segments_list
[
0
]:
if
segment
==
feature
.
segments_list
[
0
]:
feature_sequence
+=
get_segment_sequence
(
seg_seq
,
segment
)[
feature
.
pos_start
:]
# vérifier les +/- 1 pour la position
feature_sequence
+=
get_segment_sequence
(
seg_seq
,
segment
)[
feature
.
pos_start
-
1
:]
#
re
vérifier les +/- 1 pour la position
, avec de vraies données
elif
segment
==
feature
.
segments_list
[
-
1
]:
elif
segment
==
feature
.
segments_list
[
-
1
]:
feature_sequence
+=
get_segment_sequence
(
seg_seq
,
segment
)[
0
:
feature
.
pos_stop
]
# vérifier les +/- 1 pour la position
feature_sequence
+=
get_segment_sequence
(
seg_seq
,
segment
)[
0
:
feature
.
pos_stop
]
#
re
vérifier les +/- 1 pour la position
, avec de vraies données
else
:
else
:
feature_sequence
+=
get_segment_sequence
(
seg_seq
,
segment
)
feature_sequence
+=
get_segment_sequence
(
seg_seq
,
segment
)
feature
.
sequence
=
feature_sequence
feature
.
sequence
=
feature_sequence
def
transcription
(
dna_sequence
):
rna_sequence
=
""
for
dna_base
in
dna_sequence
:
match
dna_base
:
case
"
A
"
:
rna_sequence
+=
"
U
"
case
"
C
"
:
rna_sequence
+=
"
G
"
case
"
G
"
:
rna_sequence
+=
"
C
"
case
"
T
"
:
rna_sequence
+=
"
A
"
return
rna_sequence
# penser à transcrire la séquence codante du gène !!
# penser à transcrire la séquence codante du gène !!
def
get_aa
(
codon
):
def
get_aa
(
codon
):
match
codon
[
0
:
2
]:
match
codon
[
0
:
2
]:
...
...
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