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Commit bcd1c074 authored by nina.marthe_ird.fr's avatar nina.marthe_ird.fr
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reorganised functions

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Functions.py
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...@@ -613,6 +613,9 @@ def continue_var(variation,seg_seq,feature_path_source_genome,feature_path_targe ...@@ -613,6 +613,9 @@ def continue_var(variation,seg_seq,feature_path_source_genome,feature_path_targe
variation.ref+=get_segment_sequence(seg_seq,feature_path_source_genome[i]) variation.ref+=get_segment_sequence(seg_seq,feature_path_source_genome[i])
variation.seg_ref.append(feature_path_source_genome[i]) variation.seg_ref.append(feature_path_source_genome[i])
# functions to detect inversions
# gives the list of segments from list1 that are in list2 # gives the list of segments from list1 that are in list2
def get_common_segments(dict1,dict2): def get_common_segments(dict1,dict2):
list_common=[] list_common=[]
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