continued code refactoring. removed global variable segments_on_target_genome,...
continued code refactoring. removed global variable segments_on_target_genome, sorted functions in several files
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- GrAnnoT/ClassSegFeat.py 8 additions, 0 deletionsGrAnnoT/ClassSegFeat.py
- GrAnnoT/Functions.py 19 additions, 707 deletionsGrAnnoT/Functions.py
- GrAnnoT/Functions_output.py 2 additions, 507 deletionsGrAnnoT/Functions_output.py
- GrAnnoT/alignment.py 148 additions, 0 deletionsGrAnnoT/alignment.py
- GrAnnoT/detect_copies.py 171 additions, 0 deletionsGrAnnoT/detect_copies.py
- GrAnnoT/detect_inversion.py 73 additions, 0 deletionsGrAnnoT/detect_inversion.py
- GrAnnoT/genome_transfer.py 110 additions, 0 deletionsGrAnnoT/genome_transfer.py
- GrAnnoT/graph_annot.py 1 addition, 1 deletionGrAnnoT/graph_annot.py
- GrAnnoT/intersect.py 294 additions, 0 deletionsGrAnnoT/intersect.py
- GrAnnoT/load_gfa.py 94 additions, 0 deletionsGrAnnoT/load_gfa.py
- GrAnnoT/main.py 47 additions, 42 deletionsGrAnnoT/main.py
- GrAnnoT/setup_transfer.py 175 additions, 93 deletionsGrAnnoT/setup_transfer.py
- GrAnnoT/usefull_little_functions.py 63 additions, 12 deletionsGrAnnoT/usefull_little_functions.py
- GrAnnoT/variation_details.py 406 additions, 0 deletionsGrAnnoT/variation_details.py
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