Indisponibilité de la forge le mardi 18 mars entre 12h et 14h UTC+1 pour une maintenance de sécurité. Les services d'IRD Forge seront coupés : interface web, dépôt git, intégration continue, pages. Merci pour votre patience et votre compréhension.
@@ -6,7 +6,7 @@ This project is young and in development, some errors will be corrected, improve
## Usage
GrAnnoT requires the graph to be in GFA format with W-lines or P-lines that describe the walks or paths of the genomes. For example minigraph-cactus or PGGB gives that kind of output. If the graph has P-lines, the names of the paths must have the form IRGSP#0#Chr1 with three fields being the genome name, the haplotype, and the chromosome/contig name.
GrAnnoT requires the graph to be in GFA format with W-lines or P-lines that describe the walks or paths of the genomes. For example minigraph-cactus or PGGB gives that kind of output. If the graph has P-lines, the names of the paths must have the form IRGSP#0#Chr1 with three fields being the genome name, the haplotype, and the chromosome/contig name. The graphs must be full (option -gfa full for minigraph cactus and -X for PGGB for instance).
