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Commit 93f69f55 authored by nina.marthe_ird.fr's avatar nina.marthe_ird.fr
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enlevé commentaires inutiles

parent 5bad4c14
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...@@ -12,7 +12,7 @@ run="command_line" ...@@ -12,7 +12,7 @@ run="command_line"
if run=="command_line": if run=="command_line":
import sys import sys
if not(len(sys.argv)>=4) :# intersect, gfa, pos_seg if not(len(sys.argv)>=4) :# intersect, gfa, pos_seg (target_genome_name)
print("expected input : intersect, gfa file with walks, bed file with positions of the segments on the target genome") print("expected input : intersect, gfa file with walks, bed file with positions of the segments on the target genome")
#print("output : graph gff, graph gaf, target genome gff*2+variations") #print("output : graph gff, graph gaf, target genome gff*2+variations")
sys.exit(1) sys.exit(1)
...@@ -34,14 +34,6 @@ if run=="command_line": ...@@ -34,14 +34,6 @@ if run=="command_line":
target_genome_name=sys.argv[5] target_genome_name=sys.argv[5]
else: else:
target_genome_name=pos_seg.split("/")[-1].split(".")[0:-1][0] target_genome_name=pos_seg.split("/")[-1].split(".")[0:-1][0]
print(target_genome_name)
# input : intersect, gfa, pos_seg.
# out_gff, out_gaf, out_once, out_var, out_detail.
# out_gf/af = "graph.gf/af"
# out_once/detail: récupérer pos_seg, enlever le .bed, ajouter _detail au besoin. pareil pour var, le renommer azu_var_chr10.txt ?
# pos_seg.split("/")[-1].split(".")[0:-1][0]+".gff"
load_intersect(intersect) load_intersect(intersect)
......
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