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Commit 67f43ab1 authored by nina.marthe_ird.fr's avatar nina.marthe_ird.fr
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corrected the use of the graph path

parent 5f4627ae
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...@@ -53,7 +53,7 @@ def read_args(args): ...@@ -53,7 +53,7 @@ def read_args(args):
path_list.append(args.source_genome) path_list.append(args.source_genome)
if args.segment_coordinates_path==".": if args.segment_coordinates_path==".":
print("run getSegCoord.py") print("run getSegCoord.py")
seg_coord("RiceGraph_cactus.gfa",path_list) seg_coord(args.graph.name,path_list)
args.segment_coordinates_path="seg_coord/" args.segment_coordinates_path="seg_coord/"
#else: #else:
# path_segcoord=args.segment_coordinates_path # path_segcoord=args.segment_coordinates_path
......
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