Merge branch 'refactoring'
Split the code in several files, fixes some bugs
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- GrAnnoT/ClassSegFeat.py 10 additions, 3 deletionsGrAnnoT/ClassSegFeat.py
- GrAnnoT/Functions.py 0 additions, 990 deletionsGrAnnoT/Functions.py
- GrAnnoT/alignment.py 148 additions, 0 deletionsGrAnnoT/alignment.py
- GrAnnoT/argparser.py 1 addition, 55 deletionsGrAnnoT/argparser.py
- GrAnnoT/compute_cov_id.py 95 additions, 0 deletionsGrAnnoT/compute_cov_id.py
- GrAnnoT/compute_transfer_stat.py 80 additions, 0 deletionsGrAnnoT/compute_transfer_stat.py
- GrAnnoT/detect_copies.py 178 additions, 0 deletionsGrAnnoT/detect_copies.py
- GrAnnoT/detect_inversion.py 70 additions, 0 deletionsGrAnnoT/detect_inversion.py
- GrAnnoT/find_feature_target_path.py 90 additions, 0 deletionsGrAnnoT/find_feature_target_path.py
- GrAnnoT/genome_transfer.py 110 additions, 0 deletionsGrAnnoT/genome_transfer.py
- GrAnnoT/getSegmentsCoordinates.py 38 additions, 38 deletionsGrAnnoT/getSegmentsCoordinates.py
- GrAnnoT/graph_annot.py 64 additions, 0 deletionsGrAnnoT/graph_annot.py
- GrAnnoT/intersect.py 95 additions, 114 deletionsGrAnnoT/intersect.py
- GrAnnoT/load_gfa.py 95 additions, 0 deletionsGrAnnoT/load_gfa.py
- GrAnnoT/main.py 54 additions, 66 deletionsGrAnnoT/main.py
- GrAnnoT/setup_transfer.py 178 additions, 0 deletionsGrAnnoT/setup_transfer.py
- GrAnnoT/usefull_little_functions.py 100 additions, 0 deletionsGrAnnoT/usefull_little_functions.py
- GrAnnoT/variation_details.py 389 additions, 0 deletionsGrAnnoT/variation_details.py
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