removed debug print

GrAnnoT/main.py

@@ -8,7 +8,6 @@ from .Functions_output import *
 from .argparser import *
 #from inference import *
 from pathlib import Path
-#import psutil
 
 
 def main():
@@ -16,16 +15,11 @@ def main():
     args=arg()
     read_args(args) 
 
-    #print(psutil.Process().memory_info().rss)
-
     # intersect is in the output directory
     intersect=Path(args.outdir.joinpath("intersect")).resolve()
     gfa=args.graph
     load_intersect(intersect.as_posix(),args.verbose)
 
-    #print(psutil.Process().memory_info().rss / 1024**2) # B -> MiB
-    #print(psutil.Process().memory_info().rss)
-
     segments=args.segment_coordinates_path.joinpath("segments.txt")
 
     # outputs the gff and gaf of the graph
@@ -56,8 +50,6 @@ def main():
                         args.target.append(genome_name)
                 if args.verbose:
                     print(f"     Genomes found : {args.target}")
-        
-        #print(psutil.Process().memory_info().rss) 
 
         # get haplotypes for each target genome
         if args.haplotype:
@@ -81,7 +73,6 @@ def main():
         # build a dictionnary with the segment sizes to compute the coverage and id
         if not args.graph_gaf:
             seg_size=get_segments_length(segments,args.verbose)
-        #print(psutil.Process().memory_info().rss) 
         genome_index=0
         for target_genome in args.target:
             print(f'\n{target_genome} transfer :')
@@ -96,7 +87,6 @@ def main():
             print(f'     Loading the walks for the genome {target_genome}')
             walks_path=args.segment_coordinates_path.joinpath("walks.txt").as_posix()
             target_genome_paths=get_paths(walks_path,target_genome,args.haplotype)
-            #print(psutil.Process().memory_info().rss) 
             if not args.verbose:
                 print("     Loading the segments coordinates")
             for file in segment_coord_files:
@@ -113,9 +103,7 @@ def main():
 
             list_feat_absent=[]
             # do the annotation transfer (or var/aln)
-            #print(psutil.Process().memory_info().rss) 
             transfer_on_target(segments,out_target_gff,out_target_var,out_target_aln,target_genome,target_genome_paths,list_feat_absent,seg_size,args)
-            #print(psutil.Process().memory_info().rss) 
             # if pav matrix is asked, add the information of this transfer on the matrix
             if args.pav_matrix:
                 for feat in list_feat_absent:
@@ -136,6 +124,3 @@ def main():
             out_pav=args.outdir.joinpath("PAV_matrix.txt")
             with open(out_pav,'w') as file_out_pav:
                 file_out_pav.write(pav_output)
-
-    #print(tracemalloc.get_traced_memory())
-    #tracemalloc.stop()
\ No newline at end of file