Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
G
GrAnnoT
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package Registry
Container Registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
DIADE
dynadiv
GrAnnoT
Commits
22027111
Commit
22027111
authored
10 months ago
by
nina.marthe_ird.fr
Browse files
Options
Downloads
Patches
Plain Diff
added progress bar for the load intersect
parent
728439c2
No related branches found
No related tags found
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
GrAnnoT/Graph_gff.py
+5
-1
5 additions, 1 deletion
GrAnnoT/Graph_gff.py
with
5 additions
and
1 deletion
GrAnnoT/Graph_gff.py
+
5
−
1
View file @
22027111
from
.ClassSegFeat
import
*
from
tqdm
import
tqdm
# create global variables to manipulate them in the functions below and to pass them to Functions.py
global
Features
...
...
@@ -118,8 +119,11 @@ def load_intersect(intersect_path):
print
(
"
loading the intersect file
"
)
# open the file with the intersect between the segments and the gff
total_lines
=
len
([
""
for
line
in
open
(
intersect_path
,
"
r
"
)])
with
open
(
intersect_path
,
"
r
"
)
as
intersect_file
:
for
line
in
intersect_file
:
#for line in intersect_file:
for
line
in
tqdm
(
intersect_file
,
desc
=
"
Read intersect file
"
,
total
=
total_lines
,
unit
=
"
ligne
"
,
disable
=
False
):
line
=
line
.
split
()
# get the ids for the dictionnaries' keys
feature_id
=
line
[
12
].
split
(
'
;
'
)[
0
].
split
(
"
=
"
)[
1
].
replace
(
"
.
"
,
"
_
"
).
replace
(
"
:
"
,
"
_
"
)
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment