pyproject.toml

#Build system backend to create package to upload on pypi
[build-system]
build-backend = "setuptools.build_meta"
requires = [
    "setuptools>=68.2.0",
    "setuptools_scm[toml]>=8.0.0",
    "build>=1.0.0"
]

# configuration of setuptools_scm to use tag version autoincrementation
# used last TAG version dernier
[tool.setuptools_scm]
write_to = "GrAnnoT/_version.py"  #creer automatiquement
version_scheme = "release-branch-semver"
tag_regex = "^(\\d.\\d.\\d)-*\\w*\\d*$"
local_scheme = "no-local-version"

# define Project settings
[project]
name = "GrAnnoT"
dynamic = ["version"]
description = """Graph Annotation Transfer"""
authors = [
    { name = "Nina Marthe (IRD)", email = "nina.marthe@ird.fr" },
]
maintainers = [
    { name = "Nina Marthe (IRD)", email = "nina.marthe@ird.fr" },
]
dependencies = ["argparse","tqdm"
]

requires-python = ">=3.10"
readme = "README.md"
license = { file = "LICENSE" }
keywords = ["annotation", "pangenomics", "transfer","graph","pangenome"]
classifiers = [ #TODO : https://pypi.org/classifiers/
            'License :: OSI Approved :: MIT License',
            'License :: Free for non-commercial use',
            'Operating System :: POSIX :: Linux',
            'Programming Language :: Python :: 3.8',
            'Programming Language :: Python :: 3.9',
            'Natural Language :: English',
            'Topic :: Scientific/Engineering',
            'Topic :: Scientific/Engineering :: Bio-Informatics',
]

[project.urls] #TODO
#Homepage = "https://forge.ird.fr/diade/frangipane"
#Downloads = "https://forge.ird.fr/diade/frangipane/archive/"
"Bug Tracker" = "https://forge.ird.fr/diade/dynadiv/grannot/-/issues"
Documentation = "https://forge.ird.fr/diade/dynadiv/grannot/-/blob/main/GrAnnoT/grannot_help.md"
"Source Code" = "https://forge.ird.fr/diade/dynadiv/grannot"

[project.optional-dependencies]
dev = [
    "sphinx_click",
    "sphinx_copybutton",
    "sphinx_rtd_theme",
    "tox",
    "setuptools>=68.2.0",
    "setuptools_scm[toml]>=8.0.0",
    "build>=1.0.0"
]

# setup scripts links
[project.scripts]
grannot = "GrAnnoT.main:main"

[project.entry-points.grannot]
grannot = "__init__"

# Try to link sphinx to file
#[tool.sphinx]
#source-dir = "docs/source"
#build-dir = "docs/build"
#config-dir = "docs/source"