main.py

import Functions as fct

# creates segments and features for the intersect between the graph for chr10 and the gff of IRGSP
intersect_path='/home/nina/annotpangenome/align_genes/intersect_segments-genes_chr10.bed'
fct.create_seg_feat(intersect_path)

# outputs the gff of the graph for chr10
output_file='graphe_test.gff'
fct.graph_gff(output_file)

#pos_seg="pos_seg_azu.bed"
#gff="graphe_chr10_all.gff"
#out="azucena_chr10_all.gff"
#fct.azu(pos_seg,gff,out)