Added possibility to enter initial soil water content as a raster input, optional. Added yaml env file for non linux OS.

Modified all path creation with os.path.join(). Started modifications of weather part in preparation for the new CDS Climate server. Old method is not implemented yet, will find a way to work around for the time being.

Modifications to NDVI calculation scripts. Addition of irrigation mask as input. Various changes following these modifications.

New functions to download S2 Copernicus data. Functional scripts. Resolution handling has to be added for Theia and LandSat.

Modification of data directory structure. Modifications in all codes accordingly, not all scripts have been tested. Documentation, comment changes. Future changes to come.

Changes in NDVI calculation scripts for faster preprocessing. Various improvements and code changes. Added json config file example.

Some optimization improvements. Potential memory leaks to look at. Many improvements in the preprocessing scripts, almost finished the parcel mode. New scripts in the prostprocessing directory. Changes in the samir parameter handling.

Added more input preparation functions for parcel mode, started writing a global input preparation script. Reused script from modspa for config file.

Added main_run_samir.py to run the samir model. Modified config_file to manage input paths. Various bug corrections in dataset dimensions, speed improvements with parallel processing parameters. Added a notebook in postprocessing to plot pixel model outputs.

Various modifications in preprocessing codes. Improved datachunking, corrected bugs in weather dataset download, small improvements in script speed. Added a notebook to help prepare landcover and soil data for pixel mode

Calculation of ndvi cube and weather cube operational. Starting the samir params handling and time loop architecture